Detailed information NTG0039446

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: STND_RS09605
• Genome accession: NC_017563
• Coordinates: 1818307..1819407 (+)
• Length: 366 a.a.
• NCBI ID: WP_002947786.1
• Uniprot ID: Q5LXI7
• Organism: Streptococcus thermophilus ND03
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1813307..1824407

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STND_RS09580 (STND_1953)	pgsA	1813849..1814391 (-)	543	WP_002947777.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
STND_RS09585 (STND_1954)	-	1814404..1815261 (-)	858	WP_014608803.1	helix-turn-helix domain-containing protein	-
STND_RS09590 (STND_1955)	yfmH	1815320..1816598 (-)	1279	Protein_1822	EF-P 5-aminopentanol modification-associated protein YfmH	-
STND_RS09595 (STND_1956)	yfmF	1816600..1817850 (-)	1251	WP_011681762.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
STND_RS09600 (STND_1957)	yaaA	1817928..1818304 (+)	377	Protein_1824	S4 domain-containing protein YaaA	-
STND_RS09605 (STND_1958)	recF	1818307..1819407 (+)	1101	WP_002947786.1	DNA replication/repair protein RecF	Machinery gene
STND_RS09610 (STND_1959)	guaB	1819576..1821057 (-)	1482	WP_014608806.1	IMP dehydrogenase	-
STND_RS09615 (STND_1960)	trpS	1821234..1822256 (-)	1023	WP_002952292.1	tryptophan--tRNA ligase	-
STND_RS09620 (STND_1961)	-	1822684..1823556 (+)	873	WP_011227628.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42173.29 Da
• Isoelectric Point: 8.3913

>NTDB_id=39446 STND_RS09605 WP_002947786.1 1818307..1819407(+) (recF) [Streptococcus thermophilus ND03]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=39446 STND_RS09605 WP_002947786.1 1818307..1819407(+) (recF) [Streptococcus thermophilus ND03]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCACCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACGGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACTACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q5LXI7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432