Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   GE023_RS02730 Genome accession   NZ_CP053789
Coordinates   538720..539382 (+) Length   220 a.a.
NCBI ID   WP_159304868.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_98_2     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 533720..544382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE023_RS02710 (GE023_002710) - 534486..536486 (+) 2001 WP_159304865.1 potassium transporter Kup -
  GE023_RS02715 (GE023_002715) - 536615..536893 (-) 279 WP_003044201.1 GIY-YIG nuclease family protein -
  GE023_RS02720 (GE023_002720) - 536883..537659 (-) 777 WP_302051297.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  GE023_RS02725 (GE023_002725) - 537777..538517 (+) 741 WP_003044195.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  GE023_RS02730 (GE023_002730) comEA 538720..539382 (+) 663 WP_159304868.1 ComEA family DNA-binding protein Machinery gene
  GE023_RS02735 (GE023_002735) comEC/celB 539363..541606 (+) 2244 WP_159304869.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GE023_RS02740 (GE023_002740) holA 541686..542726 (+) 1041 WP_003044192.1 DNA polymerase III subunit delta -
  GE023_RS02745 (GE023_002745) sodA 542823..543428 (+) 606 WP_003044189.1 superoxide dismutase SodA -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24276.07 Da        Isoelectric Point: 5.8282

>NTDB_id=394395 GE023_RS02730 WP_159304868.1 538720..539382(+) (comEA) [Streptococcus canis strain HL_98_2]
MLDELLTKGKNLLRERYSLLALLSLLFGLFLILGLSLLFWGNRQSKTDIPALREISSVKQQVSEEKKEIQEDSSILVDLK
GAVQKEGVYKLAASSRVRDVIELAGGLTSEADKHAINLAEKLVDEQVVYVPKQGEEISVLPTASVSGKKETASKDQVKVH
INKASLEELQHIPGIGAKKAQDIIDMRDKLGGFKALEDLRQVSGIGEKTLEKLKDDIFLD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=394395 GE023_RS02730 WP_159304868.1 538720..539382(+) (comEA) [Streptococcus canis strain HL_98_2]
ATGTTAGATGAATTATTAACTAAAGGAAAAAACTTGTTGAGGGAGAGGTACTCTCTTCTAGCTTTACTCAGCCTTTTATT
TGGTCTTTTTCTGATACTAGGCTTAAGTCTTTTGTTCTGGGGAAATAGGCAGAGCAAGACAGATATTCCTGCTTTGAGAG
AAATATCGTCTGTAAAACAGCAAGTCAGTGAGGAAAAAAAGGAAATTCAAGAAGATAGCAGTATTTTAGTGGATTTAAAA
GGCGCCGTACAAAAGGAGGGAGTTTATAAGCTTGCTGCTAGCAGCCGTGTGCGAGATGTCATTGAACTAGCTGGAGGCCT
AACTTCAGAAGCTGATAAACATGCTATTAATCTTGCAGAAAAACTAGTTGATGAGCAGGTTGTTTATGTACCTAAGCAAG
GAGAAGAGATTTCTGTGCTACCAACAGCATCAGTTTCTGGTAAAAAAGAAACTGCCAGCAAGGATCAGGTAAAGGTTCAT
ATTAATAAGGCTAGCTTAGAAGAACTACAACATATCCCAGGTATTGGTGCTAAAAAAGCTCAGGATATTATCGATATGAG
AGACAAGTTAGGTGGCTTTAAAGCGTTAGAAGATCTTCGTCAAGTTTCGGGTATTGGCGAAAAAACGCTTGAGAAATTAA
AAGATGACATTTTCTTGGACTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(156-217)

SLBB domain (SLBB)

(77-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

40.541

100

0.409
  comEA Lactococcus lactis subsp. cremoris KW2

53.642

68.636

0.368