Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   HPY04_RS12020 Genome accession   NZ_CP053744
Coordinates   2672226..2672870 (+) Length   214 a.a.
NCBI ID   WP_001188315.1    Uniprot ID   -
Organism   Vibrio cholerae strain SA3G     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2667226..2677870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY04_RS12005 (HPY04_12015) - 2668420..2670003 (-) 1584 WP_175249153.1 site-specific integrase -
  HPY04_RS12010 (HPY04_12020) - 2670009..2671181 (-) 1173 WP_000687778.1 site-specific integrase -
  HPY04_RS12015 (HPY04_12025) - 2671401..2671934 (-) 534 WP_000168287.1 single-stranded DNA-binding protein -
  HPY04_RS12020 (HPY04_12030) qstR 2672226..2672870 (+) 645 WP_001188315.1 LuxR C-terminal-related transcriptional regulator Regulator
  HPY04_RS12025 (HPY04_12035) galU 2673043..2673915 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HPY04_RS12030 (HPY04_12040) uvrA 2674071..2676893 (+) 2823 WP_175249154.1 excinuclease ABC subunit UvrA Machinery gene

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24708.52 Da        Isoelectric Point: 9.6461

>NTDB_id=394087 HPY04_RS12020 WP_001188315.1 2672226..2672870(+) (qstR) [Vibrio cholerae strain SA3G]
MQRANYARTIYLLTTQPKALHPSIQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQAQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=394087 HPY04_RS12020 WP_001188315.1 2672226..2672870(+) (qstR) [Vibrio cholerae strain SA3G]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCAAAAGCGTTACATCCCAGTATTCAAGCCGC
CATTGAGCAGTTGAATCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTCAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACGGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGATACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGTCATGTCAGCA
GTCAGTTACTCCATTACTATCGTTACGCTTTCCAAAGCCATCAAGCTCAAGCAACGGTCGATTTGACTGCACGTGAAATA
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGTTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

99.533

100

0.995
  qstR Vibrio campbellii strain DS40M4

52.804

100

0.528
  qstR Vibrio parahaemolyticus RIMD 2210633

52.558

100

0.528

Multiple sequence alignment