Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FIU82_RS13635 Genome accession   NZ_CP045418
Coordinates   2915172..2915879 (-) Length   235 a.a.
NCBI ID   WP_152441290.1    Uniprot ID   A0A5P9J7T9
Organism   Pseudoalteromonas sp. THAF3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2910172..2920879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU82_RS13610 (FIU82_13790) - 2910258..2910914 (-) 657 WP_152441285.1 agglutinin biogenesis protein MshJ -
  FIU82_RS13615 (FIU82_13795) - 2910911..2911504 (-) 594 WP_152441286.1 PilN domain-containing protein -
  FIU82_RS13620 (FIU82_13800) - 2911501..2912436 (-) 936 WP_152441287.1 MSHA biogenesis protein MshI -
  FIU82_RS13625 (FIU82_13805) - 2912528..2913436 (+) 909 WP_152441288.1 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase -
  FIU82_RS13630 (FIU82_13810) - 2913423..2915018 (-) 1596 WP_152441289.1 EAL domain-containing protein -
  FIU82_RS13635 (FIU82_13815) ssb 2915172..2915879 (-) 708 WP_152441290.1 single-stranded DNA-binding protein Machinery gene
  FIU82_RS13640 (FIU82_13820) - 2915899..2917266 (-) 1368 WP_152441291.1 MFS transporter -
  FIU82_RS13645 (FIU82_13825) uvrA 2917509..2920331 (+) 2823 WP_152441292.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 25110.16 Da        Isoelectric Point: 6.0883

>NTDB_id=393914 FIU82_RS13635 WP_152441290.1 2915172..2915879(-) (ssb) [Pseudoalteromonas sp. THAF3]
MARGVNKVILVGNLGQDPEVRYMPNGNGVANISIATTDSWKDKNTGQMQERTEWHRVVLFGKLAEVAGEYLRKGSQVYIE
GRLQTRKWTDQSGQDKYTTEIVVDMGGQMQMLGGRGDNQGAASGGYQGAQQQGGFGGNNHAQSNPQQGAPQQGAAQQGGY
GQQQSNNYGQQQSNQGMQQGNQQQGGFGSQQNHQSNQHGGGQQGGGFAPKPQNAPQGGASNPMEPPIDFDDDIPF

Nucleotide


Download         Length: 708 bp        

>NTDB_id=393914 FIU82_RS13635 WP_152441290.1 2915172..2915879(-) (ssb) [Pseudoalteromonas sp. THAF3]
ATGGCGCGCGGTGTTAATAAAGTAATTTTGGTGGGTAATCTGGGTCAAGATCCAGAAGTTCGCTATATGCCAAACGGCAA
TGGCGTAGCAAATATCAGCATTGCTACCACAGATAGCTGGAAAGATAAAAATACTGGGCAAATGCAAGAGCGCACAGAGT
GGCACCGCGTGGTGCTATTTGGCAAGCTGGCAGAAGTGGCGGGTGAATACCTGCGTAAGGGCTCACAGGTTTATATCGAA
GGTCGCCTACAGACCCGTAAATGGACCGACCAAAGCGGTCAAGATAAATACACCACTGAGATCGTTGTCGATATGGGCGG
GCAAATGCAAATGCTTGGTGGTCGTGGCGATAACCAGGGTGCTGCCTCAGGCGGTTATCAAGGTGCTCAGCAACAAGGCG
GTTTTGGTGGCAATAACCACGCACAAAGTAACCCACAGCAGGGAGCTCCTCAACAGGGTGCTGCGCAGCAAGGTGGTTAC
GGGCAGCAACAAAGCAATAACTATGGCCAGCAACAAAGCAACCAAGGTATGCAGCAAGGCAATCAACAGCAAGGTGGCTT
TGGCTCTCAGCAGAATCATCAGAGCAATCAGCATGGTGGTGGCCAGCAAGGTGGTGGCTTTGCCCCTAAACCACAAAATG
CTCCACAGGGTGGTGCTTCAAACCCCATGGAACCCCCCATTGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9J7T9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.576

100

0.498
  ssb Glaesserella parasuis strain SC1401

46.352

99.149

0.46
  ssb Neisseria meningitidis MC58

38.793

98.723

0.383

Multiple sequence alignment