Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   FIU87_RS18115 Genome accession   NZ_CP045403
Coordinates   3505282..3506001 (-) Length   239 a.a.
NCBI ID   WP_152445867.1    Uniprot ID   A0A5P9HRQ0
Organism   Bacillus sp. THAF10     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3500282..3511001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU87_RS18080 (FIU87_18560) - 3500355..3500819 (-) 465 WP_152445862.1 flagellar protein FlgN -
  FIU87_RS18085 (FIU87_18565) flgM 3500834..3501121 (-) 288 WP_367643898.1 flagellar biosynthesis anti-sigma factor FlgM -
  FIU87_RS18090 (FIU87_18570) - 3501162..3501572 (-) 411 WP_152445863.1 TIGR03826 family flagellar region protein -
  FIU87_RS18095 (FIU87_18575) - 3501634..3502305 (-) 672 WP_172971102.1 ComF family protein -
  FIU87_RS18100 (FIU87_18580) comFA 3502334..3503824 (-) 1491 WP_152445865.1 DEAD/DEAH box helicase Machinery gene
  FIU87_RS18105 (FIU87_18585) - 3503895..3504737 (-) 843 WP_152446650.1 DegV family protein -
  FIU87_RS18110 - 3504870..3505235 (-) 366 WP_152445866.1 hypothetical protein -
  FIU87_RS18115 (FIU87_18590) degU 3505282..3506001 (-) 720 WP_152445867.1 response regulator transcription factor Regulator
  FIU87_RS18120 (FIU87_18595) degS 3506027..3507169 (-) 1143 WP_152445868.1 sensor histidine kinase Regulator
  FIU87_RS18125 (FIU87_18600) - 3507526..3508158 (+) 633 WP_152445869.1 YigZ family protein -
  FIU87_RS18130 (FIU87_18605) - 3508183..3509163 (+) 981 WP_152445870.1 LCP family protein -
  FIU87_RS18135 (FIU87_18610) - 3509300..3510358 (-) 1059 WP_152445871.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26513.03 Da        Isoelectric Point: 5.8115

>NTDB_id=393821 FIU87_RS18115 WP_152445867.1 3505282..3506001(-) (degU) [Bacillus sp. THAF10]
MDTTKIVIIDDHQLFREGVKRILDFESNFHVVAEGDDGDEAMDLMAQHDPDVFIMDINMPKVNGVEATRRLVDANPEAKV
IVLSIHDDENYVTHALQTGARGYLLKEMDADALVDAVKVVADGGSYLHPKVTHNLVREYRRLSENGAGSMRNGNGSGGSA
SATYQQVEIRRPLHLLTRRECEVLQLLADGKSNKAIGEALFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEVR

Nucleotide


Download         Length: 720 bp        

>NTDB_id=393821 FIU87_RS18115 WP_152445867.1 3505282..3506001(-) (degU) [Bacillus sp. THAF10]
ATGGATACGACAAAAATCGTAATTATTGATGATCATCAGCTTTTCCGTGAAGGTGTAAAACGCATTTTGGACTTTGAATC
CAACTTTCACGTAGTAGCGGAAGGGGACGACGGCGATGAGGCCATGGACTTAATGGCCCAGCATGATCCGGACGTCTTTA
TCATGGATATCAATATGCCGAAAGTAAATGGAGTCGAAGCTACTCGAAGATTGGTCGATGCCAATCCGGAAGCGAAGGTC
ATTGTTCTGTCCATTCATGATGATGAAAACTACGTCACGCACGCGCTGCAAACTGGTGCACGCGGGTACTTGTTAAAAGA
AATGGATGCTGACGCATTGGTGGACGCTGTGAAGGTAGTTGCTGACGGTGGATCCTATCTTCACCCGAAAGTAACCCACA
ACCTTGTGCGCGAATACCGCCGCTTGTCAGAAAATGGTGCCGGAAGCATGCGTAATGGTAACGGTAGTGGCGGCTCTGCT
TCTGCAACCTATCAGCAGGTCGAAATTCGTCGCCCACTTCATTTGTTAACACGCCGAGAGTGTGAGGTGCTTCAACTGTT
GGCTGACGGAAAAAGTAATAAGGCAATCGGCGAGGCATTGTTCATCAGTGAGAAAACCGTGAAAAACCATGTGAGTAACA
TCCTTCAAAAAATGAATGTAAATGACCGTACCCAGGCGGTAGTTGTTGCGATTAAGAATGGCTGGGTAGAGGTAAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(175-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9HRQ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

75.314

100

0.753

Multiple sequence alignment