Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   FIU87_RS18100 Genome accession   NZ_CP045403
Coordinates   3502334..3503824 (-) Length   496 a.a.
NCBI ID   WP_152445865.1    Uniprot ID   A0A5P9HVS1
Organism   Bacillus sp. THAF10     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3497334..3508824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU87_RS18070 (FIU87_18550) flgL 3497592..3498470 (-) 879 WP_152445860.1 flagellar hook-associated protein FlgL -
  FIU87_RS18075 (FIU87_18555) flgK 3498480..3500342 (-) 1863 WP_152445861.1 flagellar hook-associated protein FlgK -
  FIU87_RS18080 (FIU87_18560) - 3500355..3500819 (-) 465 WP_152445862.1 flagellar protein FlgN -
  FIU87_RS18085 (FIU87_18565) flgM 3500834..3501121 (-) 288 WP_367643898.1 flagellar biosynthesis anti-sigma factor FlgM -
  FIU87_RS18090 (FIU87_18570) - 3501162..3501572 (-) 411 WP_152445863.1 TIGR03826 family flagellar region protein -
  FIU87_RS18095 (FIU87_18575) - 3501634..3502305 (-) 672 WP_172971102.1 ComF family protein -
  FIU87_RS18100 (FIU87_18580) comFA 3502334..3503824 (-) 1491 WP_152445865.1 DEAD/DEAH box helicase Machinery gene
  FIU87_RS18105 (FIU87_18585) - 3503895..3504737 (-) 843 WP_152446650.1 DegV family protein -
  FIU87_RS18110 - 3504870..3505235 (-) 366 WP_152445866.1 hypothetical protein -
  FIU87_RS18115 (FIU87_18590) degU 3505282..3506001 (-) 720 WP_152445867.1 response regulator transcription factor Regulator
  FIU87_RS18120 (FIU87_18595) degS 3506027..3507169 (-) 1143 WP_152445868.1 sensor histidine kinase Regulator
  FIU87_RS18125 (FIU87_18600) - 3507526..3508158 (+) 633 WP_152445869.1 YigZ family protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55964.84 Da        Isoelectric Point: 9.6363

>NTDB_id=393820 FIU87_RS18100 WP_152445865.1 3502334..3503824(-) (comFA) [Bacillus sp. THAF10]
MLFTLKNNILYLSEQPDGKRISDFAILPHPSQSSDYPLNTDLQHYLSGKRLLLDELPFPPETIHEHYQKGYITLQHGVTN
SNKGYRCTRCANKDQGLFYSYACARCQKKCAYCRKCIMMGRVSECTPLFSWSGKHTVQQSSHASELTWNGILSKGQALAS
EKVVQAVQEKSNLLVWAVCGAGKTEVLFAGIQKALTLGQRVCIATPRTDVVLELAPRLQEVFPNMEVATLYGGSEDRSKN
APLTIATTHQLLRYYQAFDLLIIDEVDAFPYSIDATLEYAANQALKRIHTLVYLSATPSKKMQVSVKLNRLQAVMIPARY
HRQKLPVPIFEWCGRWEKKVSKGKLPANVLYWVKRHVQQGRPLFLFVPDIKLLEKITAILQKEFGELVAGVHSKDTKRKE
KVAEFRRGDIRVLVTTTILERGVTVENVQVGVLGAEDDVFTESALVQISGRAGRSKDFANGDVRFFHFGKTMEMVAARKQ
IVRMNVLARKEGLLDE

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=393820 FIU87_RS18100 WP_152445865.1 3502334..3503824(-) (comFA) [Bacillus sp. THAF10]
ATGCTCTTTACGTTGAAAAATAATATTCTCTATCTCAGTGAACAGCCTGATGGTAAGCGAATCAGTGACTTCGCTATCTT
GCCTCACCCGTCCCAATCTTCAGATTACCCACTGAACACCGACCTTCAACATTACCTCTCCGGTAAACGACTTCTTTTAG
ATGAACTTCCTTTTCCACCAGAAACCATTCACGAACATTATCAAAAAGGATATATAACTCTCCAACATGGTGTCACTAAT
TCAAACAAAGGCTATCGATGCACAAGGTGTGCAAATAAGGATCAGGGACTATTTTATTCGTATGCTTGTGCCCGTTGTCA
GAAGAAGTGTGCGTATTGCAGAAAGTGCATTATGATGGGGCGGGTAAGTGAATGTACACCCCTTTTTAGCTGGAGTGGAA
AGCACACGGTGCAGCAGTCATCACATGCATCAGAACTTACTTGGAACGGCATCCTTTCTAAAGGCCAAGCTCTTGCTTCT
GAAAAGGTGGTCCAGGCTGTTCAAGAGAAATCCAATTTACTTGTTTGGGCCGTTTGTGGAGCTGGGAAAACCGAGGTGCT
TTTTGCAGGGATCCAAAAGGCGCTCACCCTAGGGCAGCGTGTGTGTATTGCTACACCAAGAACGGATGTTGTCCTCGAGC
TTGCCCCACGCCTGCAGGAAGTGTTTCCTAACATGGAGGTGGCTACGCTTTACGGAGGCAGTGAGGATCGTAGCAAAAAT
GCACCGCTTACGATTGCGACAACACATCAGTTACTACGGTACTATCAGGCGTTTGACCTGCTGATTATCGATGAAGTGGA
TGCATTTCCTTATTCTATTGATGCCACCCTTGAATATGCAGCAAATCAGGCTTTGAAACGCATTCATACGTTGGTGTATT
TGAGTGCTACTCCATCTAAAAAAATGCAGGTTTCAGTCAAATTGAACAGGTTACAGGCTGTGATGATACCTGCCAGGTAC
CATCGGCAGAAGCTTCCTGTGCCAATTTTTGAATGGTGTGGGCGCTGGGAGAAAAAAGTGAGTAAGGGGAAGCTTCCAGC
GAATGTTTTGTATTGGGTGAAAAGGCATGTTCAACAAGGGCGGCCACTTTTTTTATTTGTACCGGATATCAAGCTGCTCG
AAAAAATCACGGCAATTTTACAAAAAGAGTTTGGGGAGCTTGTGGCTGGAGTGCATTCGAAGGATACGAAACGGAAGGAA
AAGGTGGCAGAATTTCGAAGAGGGGACATAAGGGTGCTTGTGACTACAACGATATTAGAGCGTGGCGTAACCGTTGAAAA
TGTACAGGTGGGAGTTCTAGGAGCGGAGGATGACGTGTTTACAGAGAGTGCGTTGGTGCAAATAAGCGGAAGAGCGGGAC
GAAGCAAAGATTTTGCAAATGGGGATGTTCGCTTTTTTCATTTTGGAAAAACAATGGAAATGGTGGCGGCAAGGAAGCAA
ATTGTCCGGATGAATGTTCTAGCGCGAAAGGAAGGATTGTTGGATGAGTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(356-455)

Type III restriction enzyme, res subunit (ResIII)

(153-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9HVS1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.98

91.331

0.484

Multiple sequence alignment