Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   GYMC52_RS12380 Genome accession   NC_014915
Coordinates   2525330..2525626 (-) Length   98 a.a.
NCBI ID   WP_012820551.1    Uniprot ID   -
Organism   Geobacillus sp. Y412MC52     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2520330..2530626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYMC52_RS12345 (GYMC52_2455) - 2520929..2522593 (+) 1665 WP_012820556.1 DEAD/DEAH box helicase -
  GYMC52_RS12350 (GYMC52_2456) - 2522580..2523374 (+) 795 WP_011231909.1 YqhG family protein -
  GYMC52_RS12355 (GYMC52_2457) - 2523477..2523656 (-) 180 WP_011231910.1 YqzE family protein -
  GYMC52_RS12360 (GYMC52_2458) comGG 2523703..2524092 (-) 390 WP_012820555.1 competence type IV pilus minor pilin ComGG -
  GYMC52_RS12365 (GYMC52_2459) comGF 2524168..2524614 (-) 447 WP_012820554.1 competence type IV pilus minor pilin ComGF -
  GYMC52_RS12370 (GYMC52_2460) - 2524593..2524919 (-) 327 WP_012820553.1 type II secretion system protein -
  GYMC52_RS12375 (GYMC52_2461) comGD 2524903..2525340 (-) 438 WP_012820552.1 competence type IV pilus minor pilin ComGD -
  GYMC52_RS12380 (GYMC52_2462) comGC 2525330..2525626 (-) 297 WP_012820551.1 competence type IV pilus major pilin ComGC Machinery gene
  GYMC52_RS12385 (GYMC52_2463) comGB 2525829..2526857 (-) 1029 WP_012820550.1 competence type IV pilus assembly protein ComGB -
  GYMC52_RS12390 (GYMC52_2464) comGA 2526854..2527927 (-) 1074 WP_012820549.1 competence type IV pilus ATPase ComGA Machinery gene
  GYMC52_RS12395 (GYMC52_2465) - 2528132..2529319 (+) 1188 WP_012820547.1 IS701 family transposase -
  GYMC52_RS12400 (GYMC52_2466) - 2529496..2530083 (+) 588 Protein_2454 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10769.62 Da        Isoelectric Point: 7.1323

>NTDB_id=39376 GYMC52_RS12380 WP_012820551.1 2525330..2525626(-) (comGC) [Geobacillus sp. Y412MC52]
MNQKGFTLIEMLIVMMVISVLLLIAIPNMTKHNSMINSKGCEAFLNTVQAQVKAYEMEHNKIPTVEELLAGRYIKSDKCP
NGRAIQISANGDVSESGS

Nucleotide


Download         Length: 297 bp        

>NTDB_id=39376 GYMC52_RS12380 WP_012820551.1 2525330..2525626(-) (comGC) [Geobacillus sp. Y412MC52]
ATGAATCAAAAGGGATTCACATTGATCGAAATGTTGATCGTTATGATGGTGATTTCTGTCCTGCTGCTGATTGCCATTCC
GAATATGACAAAGCACAACAGCATGATCAATTCGAAAGGATGCGAGGCGTTTTTGAACACCGTGCAAGCGCAGGTGAAAG
CGTATGAGATGGAGCATAACAAAATTCCGACGGTGGAGGAATTGCTCGCTGGCCGCTATATCAAGTCGGACAAATGTCCG
AACGGTCGTGCGATCCAAATCAGCGCGAACGGCGATGTGAGTGAAAGTGGCTCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

52.747

92.857

0.49
  comGC Staphylococcus aureus MW2

43.011

94.898

0.408
  comGC Staphylococcus aureus N315

43.011

94.898

0.408

Multiple sequence alignment