Detailed information NTG0393673

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: FIU96_RS03450
• Genome accession: NZ_CP045367
• Coordinates: 750971..752356 (-)
• Length: 461 a.a.
• NCBI ID: WP_152437346.1
• Uniprot ID: -
• Organism: Marinobacter sp. THAF39
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 745971..757356

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FIU96_RS03430 (FIU96_03475)	-	746080..749544 (+)	3465	WP_216646168.1	pilus assembly protein	-
FIU96_RS20220 (FIU96_03480)	-	749611..750015 (+)	405	WP_152437343.1	type IV pilin protein	-
FIU96_RS03440 (FIU96_03485)	-	750044..750322 (+)	279	WP_152437344.1	hypothetical protein	-
FIU96_RS03445 (FIU96_03490)	-	750355..750861 (-)	507	WP_172972312.1	GspH/FimT family pseudopilin	-
FIU96_RS03450 (FIU96_03495)	pilR	750971..752356 (-)	1386	WP_152437346.1	sigma-54-dependent transcriptional regulator	Regulator
FIU96_RS03455 (FIU96_03500)	-	752411..754057 (-)	1647	WP_152437347.1	sensor histidine kinase	-
FIU96_RS03460 (FIU96_03505)	-	754151..755815 (+)	1665	WP_152437348.1	NAD+ synthase	-
FIU96_RS03465 (FIU96_03510)	-	755886..756719 (-)	834	WP_152437349.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 50711.82 Da
• Isoelectric Point: 4.8509

>NTDB_id=393673 FIU96_RS03450 WP_152437346.1 750971..752356(-) (pilR) [Marinobacter sp. THAF39]
MTHQTALIVDDEPDIRDLLEITLTRMGITTYTAPDLTTARALLEQHKPQLCLTDMNLPDGNGIDLVHWIQQHTPCTPVAV
ITAYGSMDTAIESLKAGAFDFVSKPVELPRLRELVNSALKLSEPKNQDSAEADEPGLLLGESPQIRKLRNQTRKLARSQA
PVFISGESGSGKELVARMIHMQGPRADGPFIAVNCGAIPSELMESEFFGHKKGSFTGAVENKEGLFRSANGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRPVGDTKEVPVDIRVLSATHKNLPELVQEGSFRQDLFYRINVIELAVPPLRERAEDISLLA
DHILQRIAREYECDPAKLTPGAIERLQGYDFPGNVRELENILERAFTLCDEDFIDAGDLHLGGGAIPGTPVSERSSDTGT
SEAPAPVPEGEIDLEGFLENIERQAIEKALEATRWNKTAAAKRLGISFRALRYRLKKLGME

Nucleotide

• Length: 1386 bp

>NTDB_id=393673 FIU96_RS03450 WP_152437346.1 750971..752356(-) (pilR) [Marinobacter sp. THAF39]
ATGACACACCAAACAGCGCTGATTGTTGACGACGAACCGGATATCCGGGACTTGCTGGAGATCACCCTCACCCGAATGGG
GATTACCACCTACACCGCACCGGACCTGACTACAGCCCGGGCCCTGCTTGAACAGCATAAACCCCAGTTGTGCCTGACCG
ACATGAACCTGCCGGACGGCAACGGTATAGACCTCGTGCATTGGATTCAGCAGCACACGCCCTGCACGCCGGTAGCCGTC
ATCACTGCCTACGGCAGCATGGACACCGCCATCGAATCCCTCAAGGCCGGCGCCTTCGATTTTGTCTCCAAGCCCGTGGA
ACTGCCCCGCCTGCGGGAACTGGTGAACAGCGCCCTGAAGCTGAGCGAACCCAAGAACCAGGATAGCGCCGAAGCTGACG
AGCCCGGACTTCTGCTCGGTGAATCCCCACAAATCCGCAAGCTGCGGAACCAGACCCGTAAGCTGGCCCGCAGCCAGGCG
CCGGTGTTTATCAGCGGCGAATCCGGCAGTGGAAAAGAGCTGGTCGCCCGCATGATCCACATGCAGGGGCCAAGGGCTGA
TGGCCCCTTTATTGCCGTTAACTGCGGCGCCATCCCTTCGGAACTGATGGAAAGCGAGTTCTTTGGCCATAAGAAAGGCA
GCTTTACCGGTGCGGTCGAAAACAAGGAGGGCCTGTTCCGCAGCGCCAACGGCGGCACCCTGTTCCTGGACGAAGTCGCC
GACCTGCCCCTGGCCATGCAGGTAAAGCTGCTGCGCGCCATTCAGGAAAAGGCCGTGCGCCCGGTGGGCGATACCAAGGA
AGTGCCAGTAGATATCCGCGTACTCAGCGCCACCCACAAAAACCTGCCTGAACTGGTGCAGGAAGGCAGCTTCCGTCAGG
ACCTGTTCTACCGCATTAACGTGATTGAACTGGCGGTACCGCCTCTGCGCGAGCGGGCGGAAGACATTTCCCTGCTGGCC
GACCATATTCTGCAGCGCATCGCCCGAGAGTACGAATGCGACCCCGCCAAACTAACGCCAGGAGCTATCGAACGCCTGCA
GGGATACGATTTCCCAGGCAACGTGCGGGAGCTGGAGAACATTCTGGAGCGGGCGTTTACGCTGTGTGATGAAGATTTTA
TTGATGCGGGTGATTTGCATCTGGGTGGCGGTGCTATTCCCGGAACCCCGGTATCGGAGCGCAGCTCTGACACTGGCACA
TCAGAGGCTCCTGCTCCTGTGCCCGAGGGGGAAATAGACCTGGAAGGCTTCCTGGAGAACATCGAGCGGCAGGCGATTGA
GAAGGCGCTAGAGGCAACCCGGTGGAACAAGACGGCGGCGGCCAAGAGGCTGGGGATCAGTTTTCGGGCGTTGAGGTATC
GGTTGAAGAAGTTGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-115)

• Sigma-54 interaction domain (Sigma54_activat) (138-304)

• Bacterial regulatory protein, Fis family (HTH_8) (417-458)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	64.208	100	0.642
pilR	Acinetobacter baumannii strain A118	53.68	100	0.538
luxO	Vibrio cholerae strain A1552	37.307	98.265	0.367