Detailed information NTG0393640

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: FIU98_RS08180
• Genome accession: NZ_CP045359
• Coordinates: 1750724..1752949 (+)
• Length: 741 a.a.
• NCBI ID: WP_256663103.1
• Uniprot ID: -
• Organism: Pseudomonas sp. THAF42
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1745724..1757949

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FIU98_RS08155 (FIU98_08065)	lolD	1746545..1747231 (+)	687	WP_371923236.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
FIU98_RS08160 (FIU98_08070)	-	1747231..1748475 (+)	1245	WP_047589828.1	lipoprotein-releasing ABC transporter permease subunit	-
FIU98_RS08165 (FIU98_08075)	-	1748482..1749090 (-)	609	WP_152488324.1	LysE family translocator	-
FIU98_RS08170 (FIU98_08080)	-	1749223..1750032 (-)	810	WP_152488325.1	AraC family transcriptional regulator	-
FIU98_RS08175 (FIU98_08085)	-	1750073..1750597 (-)	525	WP_047589826.1	DUF2062 domain-containing protein	-
FIU98_RS08180 (FIU98_08090)	comA	1750724..1752949 (+)	2226	WP_256663103.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
FIU98_RS08185 (FIU98_08095)	exbB	1753022..1753654 (+)	633	WP_037048580.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
FIU98_RS08190 (FIU98_08100)	-	1753651..1754079 (+)	429	WP_152488326.1	biopolymer transporter ExbD	-
FIU98_RS08195 (FIU98_08105)	lpxK	1754080..1755084 (+)	1005	WP_152488327.1	tetraacyldisaccharide 4'-kinase	-
FIU98_RS08200 (FIU98_08110)	-	1755105..1755290 (+)	186	WP_003245207.1	Trm112 family protein	-
FIU98_RS08205 (FIU98_08115)	kdsB	1755291..1756055 (+)	765	WP_152488328.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
FIU98_RS08210 (FIU98_08120)	-	1756055..1756519 (+)	465	WP_152488329.1	low molecular weight protein-tyrosine-phosphatase	-
FIU98_RS08215 (FIU98_08125)	murB	1756516..1757535 (+)	1020	WP_152488330.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 79682.68 Da
• Isoelectric Point: 10.2867

>NTDB_id=393640 FIU98_RS08180 WP_256663103.1 1750724..1752949(+) (comA) [Pseudomonas sp. THAF42]
MRTGMLALALGLLALRFLPGLPSAGMLLLMAACALALLFSRGYPLGFFLLGLAWACCSAQWALDDRLGVALDGRTLWLEG
QVVGLPEAADGVLRFQLQDARSRRAELPARMRLAWYGGPPVLAGERWRLAVNLKRPHGLVNPQRFDYEAWLLAQRIGATG
TIKSGERLAPATGLGSWRDALRQRLLAVPAWGRQGGIAALVLGDGSGLTAEDWRLLQHTGTVHLMVISGQHIALLSGFLY
GLVALLARLGVWPQRLPWLPCACALALGGALIYGLLAGFEVPVRRACVMVALVLLWRLRFRHLGAAWPLLAALLVVLLLE
PLASLQPGFWLSFSAVAVLALAFAGRLGTWGWWRGLTRAQWTTAIGLLPMMLILGLPVSSSGPLANLLAVPWVGLVVVPL
ALFGTLLLPVPLLGEGLLWLAGGALQLLFALLGLIAGWLPAWLPSELPWWVWSLAALGAALLLLPAGVPLRLPGLALLLP
ALLVSAQGPEDGQADVWVLDVGQGLSVLVRTREHSLLYDAGPRFGDFDSGERIVLPSLRALNLRRLDLLLVSHADNDHAG
GATAVAAGMPVARVISGEPARLARSLAAEACESGRSWQWDGVTFRLWQWPQAAPGNPRSCVLQVEAEGERLLLTGDIDAA
AEQALVQSGFPLASHWLLAPHHGSRSSSSQRFIDAVGPQHVLITRSRHNAFGHPHPQVLARYQAAGVAVHDTAYAGALHL
RLGKWLAPRGLRSEARFWREK

Nucleotide

• Length: 2226 bp

>NTDB_id=393640 FIU98_RS08180 WP_256663103.1 1750724..1752949(+) (comA) [Pseudomonas sp. THAF42]
ATGCGTACAGGGATGTTGGCGCTGGCCCTGGGTTTGCTGGCGTTGCGCTTTCTGCCGGGCCTGCCGTCCGCCGGGATGCT
GCTGCTCATGGCCGCTTGCGCGCTCGCGCTGCTGTTCTCGCGGGGCTATCCCCTGGGCTTCTTCCTGCTGGGGCTGGCCT
GGGCCTGCTGCTCCGCGCAATGGGCACTGGATGATCGCCTGGGCGTGGCGCTGGATGGGCGCACCCTGTGGCTGGAAGGG
CAGGTGGTCGGCTTGCCGGAAGCGGCCGACGGTGTGCTTCGCTTCCAGTTGCAGGACGCCCGTTCACGGCGTGCCGAACT
GCCCGCCAGGATGCGCCTGGCCTGGTATGGCGGGCCACCGGTGCTGGCTGGCGAGCGTTGGCGTCTGGCAGTCAATCTCA
AGCGTCCCCATGGCCTGGTCAATCCGCAGCGTTTCGATTACGAAGCCTGGCTGCTGGCCCAGCGCATCGGCGCCACGGGG
ACGATCAAGTCGGGGGAGCGCCTGGCCCCGGCCACTGGCCTGGGCAGCTGGCGCGACGCCCTGCGCCAGCGCCTGCTGGC
GGTGCCCGCCTGGGGACGGCAGGGCGGCATTGCCGCACTGGTGCTCGGCGATGGCTCCGGCCTGACGGCGGAGGACTGGC
GTCTGTTGCAGCACACCGGCACCGTCCACCTGATGGTTATCTCCGGGCAGCACATCGCCCTGCTGTCCGGTTTCCTCTAT
GGACTGGTGGCGCTGCTGGCCAGGCTCGGGGTTTGGCCGCAGCGCCTGCCGTGGTTGCCTTGCGCCTGCGCGCTGGCCTT
GGGCGGCGCGCTGATCTATGGCCTGCTGGCCGGGTTCGAGGTGCCGGTGCGCAGGGCCTGCGTGATGGTTGCCCTGGTGC
TGTTGTGGCGCCTGCGCTTTCGTCACCTGGGCGCTGCCTGGCCGCTGTTGGCGGCTCTGCTGGTGGTGCTGTTGCTGGAG
CCGCTGGCGTCCCTGCAGCCGGGCTTCTGGCTGTCGTTCTCGGCGGTCGCCGTGCTTGCGCTGGCCTTTGCCGGGCGGCT
GGGTACCTGGGGCTGGTGGCGCGGGCTGACACGTGCGCAATGGACTACGGCGATCGGCCTGTTGCCGATGATGTTGATCC
TCGGGCTGCCGGTCAGCAGCAGCGGGCCCCTGGCCAATCTGCTCGCCGTGCCCTGGGTAGGGCTGGTGGTGGTGCCGCTG
GCGCTGTTCGGTACGCTGCTGTTGCCGGTGCCTCTGCTCGGCGAGGGCTTGCTGTGGCTGGCCGGCGGGGCATTGCAGCT
GCTCTTCGCGCTGCTCGGCCTGATCGCCGGCTGGTTGCCCGCCTGGTTGCCCAGCGAGTTGCCGTGGTGGGTCTGGTCGT
TGGCGGCGCTGGGGGCCGCGTTGCTGTTGCTGCCTGCCGGTGTGCCACTGCGCTTGCCGGGGCTGGCGCTGCTGCTGCCC
GCGCTGCTGGTATCGGCGCAAGGGCCCGAGGACGGGCAGGCCGACGTCTGGGTCCTGGATGTCGGCCAGGGCTTGTCGGT
TCTGGTGCGGACCCGCGAGCACAGCCTGCTGTACGACGCCGGGCCGCGCTTCGGCGACTTCGACAGCGGCGAACGTATCG
TCCTGCCGTCGCTGCGTGCGCTGAACCTCCGGCGGCTCGACCTGTTGCTGGTCAGCCACGCCGACAACGATCATGCTGGT
GGGGCGACGGCCGTGGCGGCTGGCATGCCGGTGGCGCGGGTCATCAGTGGCGAGCCGGCGCGTCTCGCGCGAAGCCTGGC
TGCCGAGGCCTGCGAGTCCGGGCGCAGCTGGCAGTGGGATGGCGTGACCTTCAGGTTGTGGCAATGGCCGCAGGCGGCGC
CAGGCAACCCGCGTTCCTGCGTCTTGCAGGTGGAGGCTGAGGGGGAGCGCTTGCTGTTGACCGGCGACATCGATGCGGCG
GCCGAACAGGCGCTGGTGCAATCGGGCTTCCCGCTGGCGTCGCACTGGCTGCTGGCTCCGCATCACGGCAGCCGCAGTTC
CTCCAGCCAGCGCTTCATCGACGCGGTCGGGCCGCAGCACGTGCTGATCACGCGCAGCCGGCACAATGCCTTCGGCCATC
CGCACCCGCAGGTGCTGGCGCGTTACCAGGCGGCGGGCGTGGCGGTGCATGACACCGCGTATGCCGGTGCGCTGCATCTG
CGCCTGGGCAAGTGGCTCGCACCGCGCGGGTTGCGAAGCGAGGCACGCTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (200-464)

• Domain of unknown function (DUF4131) (DUF4131) (24-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-678)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	67.083	97.166	0.652
comA	Ralstonia pseudosolanacearum GMI1000	36.613	100	0.397