Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   FIU98_RS08185 Genome accession   NZ_CP045359
Coordinates   1753022..1753654 (+) Length   210 a.a.
NCBI ID   WP_037048580.1    Uniprot ID   A0A5P9C5K1
Organism   Pseudomonas sp. THAF42     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1748022..1758654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU98_RS08165 (FIU98_08075) - 1748482..1749090 (-) 609 WP_152488324.1 LysE family translocator -
  FIU98_RS08170 (FIU98_08080) - 1749223..1750032 (-) 810 WP_152488325.1 AraC family transcriptional regulator -
  FIU98_RS08175 (FIU98_08085) - 1750073..1750597 (-) 525 WP_047589826.1 DUF2062 domain-containing protein -
  FIU98_RS08180 (FIU98_08090) comA 1750724..1752949 (+) 2226 WP_256663103.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FIU98_RS08185 (FIU98_08095) exbB 1753022..1753654 (+) 633 WP_037048580.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  FIU98_RS08190 (FIU98_08100) - 1753651..1754079 (+) 429 WP_152488326.1 biopolymer transporter ExbD -
  FIU98_RS08195 (FIU98_08105) lpxK 1754080..1755084 (+) 1005 WP_152488327.1 tetraacyldisaccharide 4'-kinase -
  FIU98_RS08200 (FIU98_08110) - 1755105..1755290 (+) 186 WP_003245207.1 Trm112 family protein -
  FIU98_RS08205 (FIU98_08115) kdsB 1755291..1756055 (+) 765 WP_152488328.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FIU98_RS08210 (FIU98_08120) - 1756055..1756519 (+) 465 WP_152488329.1 low molecular weight protein-tyrosine-phosphatase -
  FIU98_RS08215 (FIU98_08125) murB 1756516..1757535 (+) 1020 WP_152488330.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22843.12 Da        Isoelectric Point: 8.5156

>NTDB_id=393641 FIU98_RS08185 WP_037048580.1 1753022..1753654(+) (exbB) [Pseudomonas sp. THAF42]
MWELVKAGGWMMLPIILCSIAAAGIVAERLWTLRPARVTPANLLAQVWRWIKDKKLNNQKLKELREHSPLGQILAAGLAN
SKHGREIMKECIEEAAARVIHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGAGMANAPMLAGGISKALITTAA
GLIVAIPALFFHRYLQRRVDELVVGMEQEAIKLVEMVQGDRDVDLGEGKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=393641 FIU98_RS08185 WP_037048580.1 1753022..1753654(+) (exbB) [Pseudomonas sp. THAF42]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCATTCTCTGTTCCATCGCTGCTGCCGGTATCGTTGC
CGAGCGCCTGTGGACCCTGCGGCCCGCCCGCGTCACGCCGGCCAATCTGCTGGCCCAGGTATGGCGCTGGATCAAGGACA
AGAAACTGAACAACCAGAAGCTCAAGGAGCTGCGTGAGCATTCGCCGCTCGGGCAGATCCTGGCTGCTGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCCCGCGTCATTCATGATCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGGCATCGCACCGTTGCTCGGCCTGCTCGGTACCGTGCTGGGCATGATCGAAATCTTCA
GCTCCTTCATGGGCGCGGGCATGGCCAATGCGCCGATGCTCGCCGGCGGTATCTCCAAGGCGCTGATCACCACTGCGGCA
GGCCTGATCGTGGCGATCCCGGCGCTGTTCTTCCACCGCTACCTGCAACGTCGTGTCGACGAGCTGGTGGTGGGCATGGA
GCAGGAGGCGATCAAGCTGGTGGAGATGGTGCAAGGTGACCGTGACGTCGACCTGGGCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9C5K1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

88.571

100

0.886

Multiple sequence alignment