Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   FIU98_RS02090 Genome accession   NZ_CP045359
Coordinates   438700..439107 (+) Length   135 a.a.
NCBI ID   WP_152487647.1    Uniprot ID   -
Organism   Pseudomonas sp. THAF42     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 433700..444107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU98_RS02060 (FIU98_02045) - 433858..434865 (-) 1008 WP_037050152.1 aspartate carbamoyltransferase catalytic subunit -
  FIU98_RS02065 (FIU98_02050) pyrR 434876..435379 (-) 504 WP_134678176.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  FIU98_RS02070 (FIU98_02055) ruvX 435453..435890 (-) 438 WP_134678179.1 Holliday junction resolvase RuvX -
  FIU98_RS02075 (FIU98_02060) - 435887..436456 (-) 570 WP_037050146.1 YqgE/AlgH family protein -
  FIU98_RS02080 (FIU98_02065) - 436517..437413 (-) 897 WP_047585600.1 energy transducer TonB -
  FIU98_RS02085 (FIU98_02070) gshB 437502..438458 (-) 957 WP_037050142.1 glutathione synthase -
  FIU98_RS02090 (FIU98_02075) pilG 438700..439107 (+) 408 WP_152487647.1 twitching motility response regulator PilG Regulator
  FIU98_RS02095 (FIU98_02080) pilH 439155..439520 (+) 366 WP_004373130.1 twitching motility response regulator PilH -
  FIU98_RS02100 (FIU98_02085) - 439565..440101 (+) 537 WP_037050140.1 chemotaxis protein CheW -
  FIU98_RS02105 (FIU98_02090) - 440186..442222 (+) 2037 WP_037050137.1 methyl-accepting chemotaxis protein -
  FIU98_RS02110 (FIU98_02095) - 442283..443143 (+) 861 WP_037050283.1 protein-glutamate O-methyltransferase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14757.11 Da        Isoelectric Point: 6.7123

>NTDB_id=393629 FIU98_RS02090 WP_152487647.1 438700..439107(+) (pilG) [Pseudomonas sp. THAF42]
MEQHSEGLKVMVIDDSKTIRRTAETLLKKVGCDVITAVDGFDALAKIADTHPSIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAIKAHVPDFSPVEQAS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=393629 FIU98_RS02090 WP_152487647.1 438700..439107(+) (pilG) [Pseudomonas sp. THAF42]
ATGGAACAGCATTCCGAGGGTTTGAAAGTGATGGTGATCGACGATTCGAAAACGATTCGTCGCACCGCGGAAACTCTGCT
GAAAAAAGTGGGTTGTGATGTCATCACCGCGGTCGATGGCTTCGATGCCCTGGCCAAGATTGCCGACACTCACCCGAGCA
TCATCTTTGTCGACATCATGATGCCGCGTCTCGATGGGTATCAGACCTGTGCCCTGATCAAGAACAACAGTGCTTTCAAG
TCCACCCCGGTGATCATGCTGTCCTCCAAGGACGGTCTGTTCGACAAGGCCAAGGGGCGGATCGTCGGTTCCGATCAATA
TCTGACCAAGCCCTTCAGCAAGGAAGAGCTGCTCGGAGCGATCAAAGCCCACGTGCCGGACTTCTCCCCGGTAGAACAAG
CCTCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76

92.593

0.704
  vicR Streptococcus mutans UA159

42.857

93.333

0.4

Multiple sequence alignment