Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FIV01_RS13310 Genome accession   NZ_CP045350
Coordinates   2873665..2874297 (+) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio aquimaris strain THAF100     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2868665..2879297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV01_RS13285 (FIV01_13425) - 2868828..2870750 (+) 1923 WP_152431389.1 ABC transporter ATP-binding protein -
  FIV01_RS13290 (FIV01_13430) - 2870747..2871226 (+) 480 WP_152431390.1 TIGR02444 family protein -
  FIV01_RS13295 (FIV01_13435) - 2871235..2872212 (+) 978 WP_152431391.1 hydrolase -
  FIV01_RS13300 (FIV01_13440) - 2872252..2872470 (+) 219 WP_152431392.1 YheU family protein -
  FIV01_RS13305 (FIV01_13445) - 2872553..2873422 (+) 870 WP_114787384.1 phosphoribulokinase -
  FIV01_RS13310 (FIV01_13450) crp 2873665..2874297 (+) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  FIV01_RS13315 (FIV01_13455) - 2874422..2875288 (+) 867 WP_152431393.1 hypothetical protein -
  FIV01_RS13320 (FIV01_13460) - 2875341..2876138 (-) 798 WP_152431394.1 DUF1338 domain-containing protein -
  FIV01_RS13325 (FIV01_13465) astD 2876228..2877685 (-) 1458 WP_152431395.1 succinylglutamate-semialdehyde dehydrogenase -
  FIV01_RS13330 (FIV01_13470) astA 2877703..2878722 (-) 1020 WP_152431396.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=393581 FIV01_RS13310 WP_004410522.1 2873665..2874297(+) (crp) [Vibrio aquimaris strain THAF100]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=393581 FIV01_RS13310 WP_004410522.1 2873665..2874297(+) (crp) [Vibrio aquimaris strain THAF100]
ATGGTTCTAGGTAAACCTCAAACTGATCCAACATTAGAATGGTTCCTTTCACACTGTCATATTCATAAGTACCCATCTAA
GAGCACACTGATCCACGCTGGTGAGAAAGCGGAAACGCTTTACTACATAGTCAAAGGTTCAGTTGCGGTACTTATTAAAG
ACGAGGAAGGCAAGGAAATGATCCTGTCGTACCTAAACCAAGGTGACTTTATCGGTGAGCTTGGTTTGTTCGAAGAAGAC
CAAGAACGCACAGCGTGGGTTCGAGCAAAATCACCTTGTGAAGTGGCAGAAATTTCTTTCAAGAAATTCCGTCAGCTTAT
CCAAGTAAACCCTGATATCCTAATGCGCTTGTCGGCTCAAATGGCAAGTCGTTTGCAGGTAACCAGTCAAAAAGTCGGAG
ATCTTGCTTTCCTTGACGTAACTGGCCGTATCGCTCAGACACTGCTGAATCTTGCGAAACAACCAGATGCCATGACGCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAAATAGTTGGCTGTTCACGCGAAACGGTTGGCCGCAT
CTTAAAGATGCTTGAAGAGCAAAACCTGATTTCAGCACATGGTAAAACGATCGTCGTATACGGCACTCGATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment