Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | FIV01_RS12250 | Genome accession | NZ_CP045350 |
| Coordinates | 2665957..2666826 (+) | Length | 289 a.a. |
| NCBI ID | WP_152431251.1 | Uniprot ID | A0A5P9CLR0 |
| Organism | Vibrio aquimaris strain THAF100 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2660957..2671826
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FIV01_RS12225 (FIV01_12355) | ampD | 2661142..2661687 (-) | 546 | WP_152431247.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| FIV01_RS12230 (FIV01_12360) | nadC | 2661821..2662708 (+) | 888 | WP_152431248.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| FIV01_RS20875 (FIV01_12365) | - | 2662917..2663354 (+) | 438 | WP_152431249.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| FIV01_RS12240 (FIV01_12370) | pilB | 2663354..2664676 (+) | 1323 | WP_152431250.1 | ATPase, T2SS/T4P/T4SS family | Machinery gene |
| FIV01_RS12245 (FIV01_12375) | - | 2664691..2665908 (+) | 1218 | WP_246210403.1 | type II secretion system F family protein | - |
| FIV01_RS12250 (FIV01_12380) | pilD | 2665957..2666826 (+) | 870 | WP_152431251.1 | A24 family peptidase | Machinery gene |
| FIV01_RS12255 (FIV01_12385) | coaE | 2666828..2667442 (+) | 615 | WP_152431252.1 | dephospho-CoA kinase | - |
| FIV01_RS12260 (FIV01_12390) | zapD | 2667470..2668210 (+) | 741 | WP_152431253.1 | cell division protein ZapD | - |
| FIV01_RS12265 (FIV01_12395) | yacG | 2668238..2668432 (+) | 195 | WP_152431254.1 | DNA gyrase inhibitor YacG | - |
| FIV01_RS12270 (FIV01_12400) | rplS | 2668517..2668870 (-) | 354 | WP_009602110.1 | 50S ribosomal protein L19 | - |
| FIV01_RS12275 (FIV01_12405) | trmD | 2668912..2669655 (-) | 744 | WP_152431255.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| FIV01_RS12280 (FIV01_12410) | rimM | 2669700..2670248 (-) | 549 | WP_114784894.1 | ribosome maturation factor RimM | - |
| FIV01_RS12285 (FIV01_12415) | rpsP | 2670278..2670526 (-) | 249 | WP_005438039.1 | 30S ribosomal protein S16 | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32592.66 Da Isoelectric Point: 7.2544
>NTDB_id=393576 FIV01_RS12250 WP_152431251.1 2665957..2666826(+) (pilD) [Vibrio aquimaris strain THAF100]
MDLFFYHPWLFPTLATLFGLIIGSFINVVIHRLPKIMEHEWRKECADCFPEYKIKPPSGEFNLSTPNSHCPKCQTPIRVR
DNIPLVSWLVLRGKCHYCQAKISTRYPFVELLSAILSLTIAYQFEFSYFAIALLFFTFVLIAATFIDLDTMLLPDQLTLP
LVWSGITLSLLEISPVSLQDSVIGAIAGYLCLWSVYWAFKLITGKEGMGYGDFKLLSALGAWLGWQYLPIVVLLSSLVGL
IFGLIQLGLKKQGIDKAFPFGPYLAIAGWVSAIWGESIINWYFTTIIGV
MDLFFYHPWLFPTLATLFGLIIGSFINVVIHRLPKIMEHEWRKECADCFPEYKIKPPSGEFNLSTPNSHCPKCQTPIRVR
DNIPLVSWLVLRGKCHYCQAKISTRYPFVELLSAILSLTIAYQFEFSYFAIALLFFTFVLIAATFIDLDTMLLPDQLTLP
LVWSGITLSLLEISPVSLQDSVIGAIAGYLCLWSVYWAFKLITGKEGMGYGDFKLLSALGAWLGWQYLPIVVLLSSLVGL
IFGLIQLGLKKQGIDKAFPFGPYLAIAGWVSAIWGESIINWYFTTIIGV
Nucleotide
Download Length: 870 bp
>NTDB_id=393576 FIV01_RS12250 WP_152431251.1 2665957..2666826(+) (pilD) [Vibrio aquimaris strain THAF100]
ATGGATCTGTTTTTTTATCACCCTTGGTTATTCCCAACCTTAGCCACTTTATTTGGCCTAATCATAGGAAGCTTTATTAA
TGTTGTCATTCATCGTTTGCCTAAGATCATGGAACATGAATGGCGCAAAGAATGCGCAGATTGCTTTCCCGAATACAAAA
TAAAGCCGCCTTCAGGTGAGTTTAACCTGAGCACCCCGAATTCCCATTGCCCAAAATGCCAAACGCCGATTCGTGTTCGT
GACAACATTCCACTAGTAAGTTGGCTAGTATTGAGAGGGAAATGTCATTATTGCCAAGCCAAGATAAGCACTCGTTATCC
CTTTGTTGAACTGCTGTCTGCGATACTCAGCTTGACCATAGCGTATCAGTTCGAGTTCAGTTATTTCGCTATTGCTTTAC
TCTTTTTTACCTTTGTCCTCATCGCTGCAACATTCATTGATTTGGATACTATGCTATTGCCTGATCAACTGACTCTGCCT
TTGGTCTGGTCGGGCATCACTTTATCTCTCCTCGAGATAAGCCCTGTATCATTGCAAGATTCAGTGATTGGAGCTATCGC
AGGTTACTTATGCCTATGGTCTGTATACTGGGCTTTCAAACTCATCACAGGCAAAGAAGGCATGGGTTATGGTGATTTCA
AGCTACTATCCGCATTAGGAGCTTGGCTTGGTTGGCAGTACCTACCCATTGTTGTTTTACTTTCGTCTCTAGTTGGGCTC
ATATTTGGGCTCATCCAATTAGGTTTAAAAAAGCAAGGCATAGACAAAGCATTTCCTTTTGGGCCCTACCTCGCCATAGC
AGGCTGGGTAAGTGCTATCTGGGGAGAAAGTATTATAAACTGGTACTTCACTACAATTATTGGAGTCTAA
ATGGATCTGTTTTTTTATCACCCTTGGTTATTCCCAACCTTAGCCACTTTATTTGGCCTAATCATAGGAAGCTTTATTAA
TGTTGTCATTCATCGTTTGCCTAAGATCATGGAACATGAATGGCGCAAAGAATGCGCAGATTGCTTTCCCGAATACAAAA
TAAAGCCGCCTTCAGGTGAGTTTAACCTGAGCACCCCGAATTCCCATTGCCCAAAATGCCAAACGCCGATTCGTGTTCGT
GACAACATTCCACTAGTAAGTTGGCTAGTATTGAGAGGGAAATGTCATTATTGCCAAGCCAAGATAAGCACTCGTTATCC
CTTTGTTGAACTGCTGTCTGCGATACTCAGCTTGACCATAGCGTATCAGTTCGAGTTCAGTTATTTCGCTATTGCTTTAC
TCTTTTTTACCTTTGTCCTCATCGCTGCAACATTCATTGATTTGGATACTATGCTATTGCCTGATCAACTGACTCTGCCT
TTGGTCTGGTCGGGCATCACTTTATCTCTCCTCGAGATAAGCCCTGTATCATTGCAAGATTCAGTGATTGGAGCTATCGC
AGGTTACTTATGCCTATGGTCTGTATACTGGGCTTTCAAACTCATCACAGGCAAAGAAGGCATGGGTTATGGTGATTTCA
AGCTACTATCCGCATTAGGAGCTTGGCTTGGTTGGCAGTACCTACCCATTGTTGTTTTACTTTCGTCTCTAGTTGGGCTC
ATATTTGGGCTCATCCAATTAGGTTTAAAAAAGCAAGGCATAGACAAAGCATTTCCTTTTGGGCCCTACCTCGCCATAGC
AGGCTGGGTAAGTGCTATCTGGGGAGAAAGTATTATAAACTGGTACTTCACTACAATTATTGGAGTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
74.048 |
100 |
0.74 |
| pilD | Vibrio cholerae strain A1552 |
71.875 |
99.654 |
0.716 |
| pilD | Acinetobacter baumannii D1279779 |
50.746 |
92.734 |
0.471 |
| pilD | Acinetobacter nosocomialis M2 |
50.746 |
92.734 |
0.471 |
| pilD | Neisseria gonorrhoeae MS11 |
44.755 |
98.962 |
0.443 |