Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FIV04_RS13565 Genome accession   NZ_CP045338
Coordinates   2986480..2987112 (+) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio sp. THAF190c     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2981480..2992112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV04_RS13545 (FIV04_13600) - 2983369..2983857 (+) 489 WP_152469372.1 TIGR02444 family protein -
  FIV04_RS13550 (FIV04_13605) - 2984012..2984989 (+) 978 WP_152469373.1 hydrolase -
  FIV04_RS13555 (FIV04_13610) - 2985079..2985291 (+) 213 WP_032550029.1 YheU family protein -
  FIV04_RS13560 (FIV04_13615) - 2985369..2986238 (+) 870 WP_032550028.1 phosphoribulokinase -
  FIV04_RS13565 (FIV04_13620) crp 2986480..2987112 (+) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  FIV04_RS13570 (FIV04_13625) - 2987318..2988109 (-) 792 WP_150869374.1 DUF1338 domain-containing protein -
  FIV04_RS13575 (FIV04_13630) astD 2988317..2989774 (-) 1458 WP_152469374.1 succinylglutamate-semialdehyde dehydrogenase -
  FIV04_RS13580 (FIV04_13635) astA 2989807..2990826 (-) 1020 WP_152469571.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=393503 FIV04_RS13565 WP_004410522.1 2986480..2987112(+) (crp) [Vibrio sp. THAF190c]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=393503 FIV04_RS13565 WP_004410522.1 2986480..2987112(+) (crp) [Vibrio sp. THAF190c]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
GAGTACTCTGATTCACGCTGGTGAAAAGGCAGAGACCCTGTACTACATCGTTAAGGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTTATCGGCGAACTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACTGCATGGGTTCGTGCAAAATCTCCTTGTGAAGTTGCAGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGACATCCTGATGCGTCTTTCTGCGCAAATGGCTAGCCGTCTGCAAGTAACCAGCCAAAAAGTTGGTG
ACTTAGCGTTCCTTGACGTTACTGGTCGTATCGCACAAACGCTACTAAACCTAGCGAAACAACCTGATGCGATGACTCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAGATCGGTCAGATTGTTGGCTGTTCACGTGAGACTGTTGGTCGTAT
CTTGAAGATGCTAGAAGAGCAAAACCTAATTTCTGCTCACGGTAAAACTATCGTTGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment