Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   FIV04_RS07505 Genome accession   NZ_CP045338
Coordinates   1683732..1685219 (+) Length   495 a.a.
NCBI ID   WP_152468722.1    Uniprot ID   A0A5P9B8J3
Organism   Vibrio sp. THAF190c     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1678732..1690219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV04_RS07485 (FIV04_07535) - 1679779..1680768 (+) 990 WP_032549003.1 ABC transporter substrate-binding protein -
  FIV04_RS07490 (FIV04_07540) - 1680892..1681791 (+) 900 WP_152468720.1 proline/glycine betaine ABC transporter permease -
  FIV04_RS07495 (FIV04_07545) - 1681784..1683010 (+) 1227 WP_150872481.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  FIV04_RS07500 (FIV04_07550) - 1683261..1683635 (+) 375 WP_253895322.1 Hpt domain-containing protein -
  FIV04_RS07505 (FIV04_07555) luxO 1683732..1685219 (+) 1488 WP_152468722.1 sigma-54 dependent transcriptional regulator Regulator
  FIV04_RS07510 (FIV04_07560) - 1685200..1686282 (+) 1083 WP_152468723.1 glycosyltransferase family 4 protein -
  FIV04_RS07515 (FIV04_07565) - 1686540..1687712 (+) 1173 WP_152468724.1 glycosyltransferase -
  FIV04_RS07520 (FIV04_07570) - 1687736..1688965 (+) 1230 WP_152468725.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 55177.34 Da        Isoelectric Point: 5.8858

>NTDB_id=393485 FIV04_RS07505 WP_152468722.1 1683732..1685219(+) (luxO) [Vibrio sp. THAF190c]
MRPKVLLVEDSTSLAVLYKQYVKDEPYDIFHVETGAEAKTFIERHTPQLVILDLKLPDMSGEEVLDWITENEVPTAVIIA
TAHGSVDIAVSLIQRGAEDFLEKPIQAERLKTSVQLHLKRAKLENLVENIKSKFDREAFQGFIGSCLPMQAVYKTIDSVA
PTTASVFINGESGTGKEVCAEAIHKESQRRDKPFVAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAAMQAHGGTLFL
DELCEMELEMQKKLLRFLQTGTFTPLGATREVKVDVRIICATNRDPLLEVEEGRFREDLYYRVHVVPIEMPPLRERGSDI
VTLCKHFLKIYAKQDGKKFKSIDKEAQVLLKNYPWPGNVRQLQNIIRNIVVLNNETNVTKEMIPAPINGTGGRSKIVTPI
KRVEPVQEAVAEPVSKPAPLTPEQIEAATESSGPALTNGDGSIRPMWKIEREAIQNAINHCDGNVLNAAVLLELSPSTVY
RKKQAWEAEDEYNQA

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=393485 FIV04_RS07505 WP_152468722.1 1683732..1685219(+) (luxO) [Vibrio sp. THAF190c]
ATGCGCCCTAAAGTATTGTTAGTTGAAGACTCCACTTCATTAGCTGTTTTATACAAACAGTATGTAAAAGATGAGCCCTA
TGACATTTTTCACGTCGAGACGGGAGCAGAAGCCAAAACTTTTATAGAGCGTCACACGCCGCAACTGGTTATCCTTGACC
TTAAACTGCCTGATATGTCGGGTGAAGAGGTATTAGATTGGATAACAGAAAATGAAGTTCCAACGGCCGTAATTATTGCT
ACCGCTCATGGCTCAGTAGACATTGCCGTTAGCCTTATTCAGCGTGGCGCGGAAGACTTTCTTGAAAAGCCAATTCAAGC
CGAGCGCTTGAAAACCTCAGTACAGCTGCACCTTAAACGCGCCAAGCTAGAGAACTTAGTGGAAAACATTAAGAGCAAGT
TTGACCGCGAGGCCTTCCAAGGCTTCATTGGTTCATGTCTACCGATGCAAGCCGTATATAAAACGATCGACTCGGTAGCT
CCAACCACCGCCAGTGTGTTCATTAATGGTGAAAGCGGTACTGGTAAAGAAGTGTGTGCCGAAGCCATCCATAAAGAGAG
CCAACGTCGCGACAAGCCGTTCGTTGCGATTAACTGTGGTGCAATTCCTCGAGACCTGATGGAAAGTGAAATCTTCGGTC
ACGTTAAAGGCGCATTTACTGGCGCAACGACAGATAGAAAAGGCGCTGCGATGCAAGCGCACGGTGGTACCTTATTTCTC
GACGAGCTCTGTGAAATGGAGCTCGAAATGCAGAAGAAGCTCTTGCGATTCTTACAAACAGGTACATTTACCCCACTAGG
GGCGACTCGCGAAGTTAAAGTAGATGTGCGAATCATCTGTGCAACCAACCGTGACCCGCTGTTAGAAGTTGAAGAAGGTC
GCTTTAGAGAAGATCTCTACTACCGTGTTCACGTTGTACCGATTGAGATGCCACCTTTGCGAGAACGTGGTAGTGACATT
GTCACGCTATGCAAGCACTTCCTGAAAATCTACGCTAAGCAAGATGGCAAGAAATTCAAATCAATAGATAAAGAGGCTCA
GGTTTTACTAAAGAACTATCCTTGGCCGGGTAATGTCCGCCAACTTCAGAACATTATTCGCAACATTGTGGTTCTCAATA
ACGAAACCAATGTGACCAAAGAGATGATCCCTGCGCCGATTAATGGTACGGGTGGCCGAAGCAAAATCGTAACGCCTATT
AAGCGCGTCGAACCTGTTCAAGAAGCAGTAGCAGAACCGGTTTCCAAGCCTGCCCCTTTGACTCCAGAGCAAATTGAGGC
CGCAACTGAGAGTAGCGGCCCCGCTCTTACCAATGGTGATGGCAGCATTCGCCCAATGTGGAAGATTGAGCGAGAAGCGA
TTCAAAATGCGATCAACCACTGTGATGGTAACGTGTTGAATGCTGCGGTGCTGTTAGAGCTTAGCCCTTCCACGGTGTAT
CGTAAGAAGCAGGCATGGGAAGCTGAAGATGAGTATAACCAAGCCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(446-482)

Sigma-54 interaction domain (Sigma54_activat)

(143-309)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9B8J3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.688

97.172

0.483
  pilR Acinetobacter baumannii strain A118

36.016

100

0.362

Multiple sequence alignment