Detailed information NTG0393441

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: FIV08_RS03450
• Genome accession: NZ_CP045324
• Coordinates: 751004..752389 (-)
• Length: 461 a.a.
• NCBI ID: WP_152437346.1
• Uniprot ID: -
• Organism: Marinobacter sp. THAF197a
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 746004..757389

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FIV08_RS03430 (FIV08_03480)	-	746113..749577 (+)	3465	WP_216646168.1	pilus assembly protein	-
FIV08_RS03435 (FIV08_03485)	-	749644..750048 (+)	405	WP_152437343.1	type IV pilin protein	-
FIV08_RS03440 (FIV08_03490)	-	750077..750355 (+)	279	WP_152437344.1	hypothetical protein	-
FIV08_RS03445 (FIV08_03495)	-	750388..750894 (-)	507	WP_172972312.1	GspH/FimT family pseudopilin	-
FIV08_RS03450 (FIV08_03500)	pilR	751004..752389 (-)	1386	WP_152437346.1	sigma-54-dependent transcriptional regulator	Regulator
FIV08_RS03455 (FIV08_03505)	-	752444..754090 (-)	1647	WP_152437347.1	sensor histidine kinase	-
FIV08_RS03460 (FIV08_03510)	-	754184..755848 (+)	1665	WP_152437348.1	NAD+ synthase	-
FIV08_RS03465 (FIV08_03515)	-	755919..756752 (-)	834	WP_152437349.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 50711.82 Da
• Isoelectric Point: 4.8509

>NTDB_id=393441 FIV08_RS03450 WP_152437346.1 751004..752389(-) (pilR) [Marinobacter sp. THAF197a]
MTHQTALIVDDEPDIRDLLEITLTRMGITTYTAPDLTTARALLEQHKPQLCLTDMNLPDGNGIDLVHWIQQHTPCTPVAV
ITAYGSMDTAIESLKAGAFDFVSKPVELPRLRELVNSALKLSEPKNQDSAEADEPGLLLGESPQIRKLRNQTRKLARSQA
PVFISGESGSGKELVARMIHMQGPRADGPFIAVNCGAIPSELMESEFFGHKKGSFTGAVENKEGLFRSANGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRPVGDTKEVPVDIRVLSATHKNLPELVQEGSFRQDLFYRINVIELAVPPLRERAEDISLLA
DHILQRIAREYECDPAKLTPGAIERLQGYDFPGNVRELENILERAFTLCDEDFIDAGDLHLGGGAIPGTPVSERSSDTGT
SEAPAPVPEGEIDLEGFLENIERQAIEKALEATRWNKTAAAKRLGISFRALRYRLKKLGME

Nucleotide

• Length: 1386 bp

>NTDB_id=393441 FIV08_RS03450 WP_152437346.1 751004..752389(-) (pilR) [Marinobacter sp. THAF197a]
ATGACACACCAAACAGCGCTGATTGTTGACGACGAACCGGATATCCGGGACTTGCTGGAGATCACCCTCACCCGAATGGG
GATTACCACCTACACCGCACCGGACCTGACTACAGCCCGGGCCCTGCTTGAACAGCATAAACCCCAGTTGTGCCTGACCG
ACATGAACCTGCCGGACGGCAACGGTATAGACCTCGTGCATTGGATTCAGCAGCACACGCCCTGCACGCCGGTAGCCGTC
ATCACTGCCTACGGCAGCATGGACACCGCCATCGAATCCCTCAAGGCCGGCGCCTTCGATTTTGTCTCCAAGCCCGTGGA
ACTGCCCCGCCTGCGGGAACTGGTGAACAGCGCCCTGAAGCTGAGCGAACCCAAGAACCAGGATAGCGCCGAAGCTGACG
AGCCCGGACTTCTGCTCGGTGAATCCCCACAAATCCGCAAGCTGCGGAACCAGACCCGTAAGCTGGCCCGCAGCCAGGCG
CCGGTGTTTATCAGCGGCGAATCCGGCAGTGGAAAAGAGCTGGTCGCCCGCATGATCCACATGCAGGGGCCAAGGGCTGA
TGGCCCCTTTATTGCCGTTAACTGCGGCGCCATCCCTTCGGAACTGATGGAAAGCGAGTTCTTTGGCCATAAGAAAGGCA
GCTTTACCGGTGCGGTCGAAAACAAGGAGGGCCTGTTCCGCAGCGCCAACGGCGGCACCCTGTTCCTGGACGAAGTCGCC
GACCTGCCCCTGGCCATGCAGGTAAAGCTGCTGCGCGCCATTCAGGAAAAGGCCGTGCGCCCGGTGGGCGATACCAAGGA
AGTGCCAGTAGATATCCGCGTACTCAGCGCCACCCACAAAAACCTGCCTGAACTGGTGCAGGAAGGCAGCTTCCGTCAGG
ACCTGTTCTACCGCATTAACGTGATTGAACTGGCGGTACCGCCTCTGCGCGAGCGGGCGGAAGACATTTCCCTGCTGGCC
GACCATATTCTGCAGCGCATCGCCCGAGAGTACGAATGCGACCCCGCCAAACTAACGCCAGGAGCTATCGAACGCCTGCA
GGGATACGATTTCCCAGGCAACGTGCGGGAGCTGGAGAACATTCTGGAGCGGGCGTTTACGCTGTGTGATGAAGATTTTA
TTGATGCGGGTGATTTGCATCTGGGTGGCGGTGCTATTCCCGGAACCCCGGTATCGGAGCGCAGCTCTGACACTGGCACA
TCAGAGGCTCCTGCTCCTGTGCCCGAGGGGGAAATAGACCTGGAAGGCTTCCTGGAGAACATCGAGCGGCAGGCGATTGA
GAAGGCGCTAGAGGCAACCCGGTGGAACAAGACGGCGGCGGCCAAGAGGCTGGGGATCAGTTTTCGGGCGTTGAGGTATC
GGTTGAAGAAGTTGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-115)

• Sigma-54 interaction domain (Sigma54_activat) (138-304)

• Bacterial regulatory protein, Fis family (HTH_8) (417-458)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	64.208	100	0.642
pilR	Acinetobacter baumannii strain A118	53.68	100	0.538
luxO	Vibrio cholerae strain A1552	37.307	98.265	0.367