Detailed information NTG0393401

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: HPC60_RS12755
• Genome accession: NZ_CP053671
• Coordinates: 2502248..2502841 (-)
• Length: 197 a.a.
• NCBI ID: WP_179107771.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis strain G121
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2497248..2507841

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPC60_RS12725 (HPC60_07475)	-	2497455..2497619 (-)	165	WP_003131988.1	hypothetical protein	-
HPC60_RS12730 (HPC60_07480)	-	2497796..2498341 (-)	546	WP_023190206.1	AAA family ATPase	-
HPC60_RS12735 (HPC60_07485)	-	2498338..2499522 (-)	1185	WP_014570851.1	ABC transporter permease	-
HPC60_RS12740 (HPC60_07490)	-	2499589..2499879 (-)	291	WP_023190207.1	hypothetical protein	-
HPC60_RS12745 (HPC60_07495)	-	2500099..2500983 (-)	885	WP_023190208.1	XRE/MutR family transcriptional regulator	-
HPC60_RS12750 (HPC60_07500)	ruvB	2501120..2502121 (-)	1002	WP_003131994.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
HPC60_RS12755 (HPC60_07505)	ruvA	2502248..2502841 (-)	594	WP_179107771.1	Holliday junction branch migration protein RuvA	Machinery gene
HPC60_RS12760 (HPC60_07510)	hexB	2502954..2504924 (-)	1971	WP_179107772.1	DNA mismatch repair endonuclease MutL	Machinery gene
HPC60_RS12765 (HPC60_07515)	-	2505053..2505748 (-)	696	WP_023190211.1	hypothetical protein	-

Sequence

Protein

• Length: 197 a.a.
• Molecular weight: 21154.67 Da
• Isoelectric Point: 5.8174

>NTDB_id=393401 HPC60_RS12755 WP_179107771.1 2502248..2502841(-) (ruvA) [Lactococcus lactis subsp. lactis strain G121]
MFEYLNGKLVKISPTNIVIDVAGIGYLISVANPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLISVSGI
GPKSALAIIAAADNEGLTTAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATGTVGISLLDAGPAGNLALEEAIEALQ
ALGYKATELKKIEKKLAQETGLTSEEYIKSALKLMMK

Nucleotide

• Length: 594 bp

>NTDB_id=393401 HPC60_RS12755 WP_179107771.1 2502248..2502841(-) (ruvA) [Lactococcus lactis subsp. lactis strain G121]
ATGTTTGAATATCTTAATGGAAAATTAGTAAAAATTTCCCCAACAAATATTGTAATTGATGTAGCAGGAATTGGTTATCT
TATCAGTGTAGCTAACCCTTACGCTTGGTCTGCTTTGATGAACACAGAAGTAAAAATTTATGTTCATCAAGTCATTCGCG
AAGATGCCCACAGCCTCTATGGTTTTGTTAACGAGGCCGAAAAAGCTTTATTCTTACGTCTGATCAGCGTTTCTGGGATT
GGGCCAAAATCAGCTCTGGCCATCATTGCGGCGGCTGATAACGAAGGTTTAACCACTGCTATTGACAATAGTGATATCAA
GTATTTAACTAAATTTCCAGGAGTTGGTAAAAAAACAGCCATGCAGATGGTGCTTGATTTGGCTGGGAAATTTGATGCGA
CAGGAACTGTAGGTATTTCTCTTCTTGATGCTGGACCTGCTGGCAATCTTGCTTTGGAAGAAGCGATTGAAGCGCTGCAA
GCTTTGGGTTATAAAGCAACAGAATTGAAGAAAATTGAGAAAAAATTAGCTCAAGAAACAGGTCTGACCAGCGAAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

• RuvA N terminal domain (RuvA_N) (1-61)

• RuvA, C-terminal domain (RuvA_C) (151-196)

• Helix-hairpin-helix domain (HHH_5) (71-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	60.101	100	0.604
ruvA	Streptococcus pneumoniae R6	60.101	100	0.604
ruvA	Streptococcus pneumoniae D39	60.101	100	0.604
ruvA	Bacillus subtilis subsp. subtilis str. 168	44.335	100	0.457