Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   HPC60_RS02360 Genome accession   NZ_CP053671
Coordinates   450331..451113 (+) Length   260 a.a.
NCBI ID   WP_023188991.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain G121     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 445331..456113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPC60_RS02335 (HPC60_10215) vicX 445356..446168 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  HPC60_RS02340 (HPC60_10220) vicK 446337..447779 (-) 1443 WP_012897229.1 cell wall metabolism sensor histidine kinase WalK Regulator
  HPC60_RS02345 (HPC60_10225) yycF 447772..448473 (-) 702 WP_003131580.1 response regulator YycF -
  HPC60_RS02350 (HPC60_10230) tmk 448651..449286 (+) 636 WP_012897230.1 dTMP kinase -
  HPC60_RS02355 (HPC60_10235) - 449419..450279 (+) 861 WP_012897231.1 DNA polymerase III subunit delta' -
  HPC60_RS02360 (HPC60_10240) yaaT 450331..451113 (+) 783 WP_023188991.1 stage 0 sporulation family protein Regulator
  HPC60_RS02365 (HPC60_10245) yabA 451106..451432 (+) 327 WP_011675472.1 DNA replication initiation control protein YabA -
  HPC60_RS02370 (HPC60_10250) rsmI 451432..452307 (+) 876 WP_003131568.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  HPC60_RS02375 (HPC60_10255) - 452384..452575 (-) 192 WP_012897234.1 hypothetical protein -
  HPC60_RS02380 (HPC60_10260) mvk 452638..453570 (-) 933 WP_003131564.1 mevalonate kinase -
  HPC60_RS02385 (HPC60_10265) mvaD 453875..454831 (+) 957 WP_179107856.1 diphosphomevalonate decarboxylase -
  HPC60_RS02390 (HPC60_10270) - 454818..455807 (+) 990 WP_021721904.1 mevalonate kinase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29817.30 Da        Isoelectric Point: 6.0566

>NTDB_id=393329 HPC60_RS02360 WP_023188991.1 450331..451113(+) (yaaT) [Lactococcus lactis subsp. lactis strain G121]
MIYEIKFAHGESNVFAISDIELAPQTEVILRSDKGNFYGKIVREISEEANLEIHHTIVREVNEDDLQVIAKLEERSKQAK
DKVRQLIIEQGLEMKIIDVAYNFDQMQLFISFTAENRVDFRLLLRELATTFRIRIELRQIGPRDAAKIHGGLGPCGRPLC
CSEFVYEFPNVSIKMAKNQNLSLKQNKLNGLCGRLMCCLTYEDSFYKEAQQLFPDFGEFVTTSEGKGKVVGLNVLKNRVK
IRFGEYSKDFELAEIEVNHG

Nucleotide


Download         Length: 783 bp        

>NTDB_id=393329 HPC60_RS02360 WP_023188991.1 450331..451113(+) (yaaT) [Lactococcus lactis subsp. lactis strain G121]
ATGATTTATGAAATAAAATTTGCACATGGCGAATCAAATGTATTTGCAATAAGTGATATAGAACTTGCTCCACAAACAGA
AGTTATCCTTCGTTCAGATAAGGGAAACTTTTACGGAAAAATTGTACGTGAAATTTCTGAAGAAGCTAATCTTGAAATTC
ACCACACGATTGTGCGTGAAGTAAATGAGGATGATCTCCAAGTTATTGCAAAACTTGAAGAACGTTCTAAACAAGCCAAA
GATAAAGTTCGCCAACTTATCATCGAACAAGGTTTGGAAATGAAAATTATTGATGTTGCTTATAATTTCGACCAAATGCA
ACTTTTTATTTCGTTTACAGCAGAGAATCGTGTTGATTTTCGATTGCTTTTGCGTGAGTTGGCAACAACTTTTAGAATTA
GGATTGAACTTCGCCAAATTGGGCCAAGAGATGCGGCTAAAATTCATGGTGGACTTGGACCTTGTGGACGTCCTTTGTGC
TGTTCTGAGTTTGTTTATGAATTTCCAAATGTTTCAATCAAAATGGCCAAAAATCAAAATCTATCTTTGAAACAAAATAA
ATTGAACGGTCTTTGCGGTCGTTTGATGTGCTGTTTAACTTATGAAGATAGTTTTTATAAAGAAGCCCAACAACTTTTCC
CAGATTTTGGTGAGTTTGTAACTACCTCAGAAGGAAAAGGAAAAGTTGTTGGCTTAAATGTTTTAAAAAATAGAGTAAAA
ATCCGCTTTGGAGAATATAGCAAGGATTTTGAACTTGCAGAAATTGAGGTGAATCATGGCTGA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(56-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

45.662

84.231

0.385