Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   HPC60_RS02335 Genome accession   NZ_CP053671
Coordinates   445356..446168 (-) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis subsp. lactis strain G121     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 440356..451168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPC60_RS02310 (HPC60_10190) ytpR 440583..441209 (+) 627 WP_003131594.1 YtpR family tRNA-binding protein -
  HPC60_RS02315 (HPC60_10195) nox 441371..442711 (+) 1341 WP_023188995.1 H2O-forming NADH oxidase -
  HPC60_RS02320 (HPC60_10200) - 442798..443189 (+) 392 Protein_455 single-stranded DNA-binding protein -
  HPC60_RS02325 (HPC60_10205) groES 443309..443593 (+) 285 WP_003131589.1 co-chaperone GroES -
  HPC60_RS02330 (HPC60_10210) groL 443682..445310 (+) 1629 WP_179107855.1 chaperonin GroEL -
  HPC60_RS02335 (HPC60_10215) vicX 445356..446168 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  HPC60_RS02340 (HPC60_10220) vicK 446337..447779 (-) 1443 WP_012897229.1 cell wall metabolism sensor histidine kinase WalK Regulator
  HPC60_RS02345 (HPC60_10225) yycF 447772..448473 (-) 702 WP_003131580.1 response regulator YycF -
  HPC60_RS02350 (HPC60_10230) tmk 448651..449286 (+) 636 WP_012897230.1 dTMP kinase -
  HPC60_RS02355 (HPC60_10235) - 449419..450279 (+) 861 WP_012897231.1 DNA polymerase III subunit delta' -
  HPC60_RS02360 (HPC60_10240) yaaT 450331..451113 (+) 783 WP_023188991.1 stage 0 sporulation family protein Regulator

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=393326 HPC60_RS02335 WP_003131583.1 445356..446168(-) (vicX) [Lactococcus lactis subsp. lactis strain G121]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=393326 HPC60_RS02335 WP_003131583.1 445356..446168(-) (vicX) [Lactococcus lactis subsp. lactis strain G121]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCTATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAAAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCCTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685

Multiple sequence alignment