Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   GCU53_RS06405 Genome accession   NZ_CP045302
Coordinates   1360986..1363196 (-) Length   736 a.a.
NCBI ID   WP_152389810.1    Uniprot ID   -
Organism   Azotobacter salinestris strain KACC 13899     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1355986..1368196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU53_RS06370 murB 1356367..1357386 (-) 1020 WP_152386867.1 UDP-N-acetylmuramate dehydrogenase -
  GCU53_RS06375 - 1357383..1357847 (-) 465 WP_152386868.1 low molecular weight protein-tyrosine-phosphatase -
  GCU53_RS06380 kdsB 1357847..1358611 (-) 765 WP_152386869.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GCU53_RS06385 - 1358608..1358793 (-) 186 WP_089167535.1 Trm112 family protein -
  GCU53_RS06390 lpxK 1358855..1359856 (-) 1002 WP_152386870.1 tetraacyldisaccharide 4'-kinase -
  GCU53_RS06395 - 1359856..1360284 (-) 429 WP_152386871.1 biopolymer transporter ExbD -
  GCU53_RS06400 - 1360281..1360913 (-) 633 WP_152386872.1 MotA/TolQ/ExbB proton channel family protein -
  GCU53_RS06405 comA 1360986..1363196 (-) 2211 WP_152389810.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GCU53_RS06410 - 1363338..1363865 (+) 528 WP_152386873.1 DUF2062 domain-containing protein -
  GCU53_RS06415 - 1363891..1365135 (-) 1245 WP_152386874.1 lipoprotein-releasing ABC transporter permease subunit -
  GCU53_RS06420 lolD 1365138..1365836 (-) 699 WP_152386875.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  GCU53_RS06425 - 1365829..1367079 (-) 1251 WP_152386876.1 lipoprotein-releasing ABC transporter permease subunit -
  GCU53_RS06430 - 1367367..1368089 (+) 723 WP_152386877.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 79960.87 Da        Isoelectric Point: 9.8234

>NTDB_id=393266 GCU53_RS06405 WP_152389810.1 1360986..1363196(-) (comA) [Azotobacter salinestris strain KACC 13899]
MFALAAGLLALRFLPALPPWWLWSLMLLGGLACLSLRRYLPALFLLGLSWACLSAYWALEERLPAGLDGRTLWLEGQVSG
LPERVDGTLRFQLEDAFSRRAELPRRLRLAWHAAPEIRAGERWRLAVTLKRPRGLANPQGFDYEAWLLAQRIGATGTVKA
GERLGAPDAADGWRDSLRQRLRQVDALGRAGALAALVVGDASGLSAADWKLLQDTGTVHLMVISGQHVGLLAGLVYGLIA
LLARHGVWPRALPWLPCACGLALASALGYGWLAGFGVPVQRACAMVAVVLLWRLRFRHLGFWLSLLMALDGVLLLEPLAS
LQPGFWLSFGAVAILVLAFGGRLGAWPWRQTLWRAQWTCALGLLPLLLALGLPISLSGPLANLVAVPWVSLAVVPLALLG
TLLLPLPAIGEGLLWLAGALLAALFWLFGTIAGGVPAWLPHEVPIWSWLLALLGILLILLPAGVPLRALGLAMLLPLAFP
PQARIPHGRADVWVLDVGQGLAVLLRTREHSLLYDAGPRFGDFDMGERVVLPSLRSLGVTRLDRLLLSHADADHAGGALA
VQRGLPLGEVVAGEAQALPAPLGAWPCASRNWDWDGVRFATWHWTAVQEGNRASCVLLVEAGGERLLLTGDIDVAAERAL
LDSHPDWRADWLLAPHHGSRSSSSPALLDALAPRAVLISRSWHNGFGHPHPEVVARYRKLPAVIYDTARQGALQFRLGDW
GRARGLREESRFWREK

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=393266 GCU53_RS06405 WP_152389810.1 1360986..1363196(-) (comA) [Azotobacter salinestris strain KACC 13899]
ATGTTTGCGCTCGCGGCAGGCCTGCTCGCCCTGCGTTTTCTCCCGGCCCTGCCACCCTGGTGGCTGTGGTCGCTGATGCT
GCTGGGCGGGCTGGCCTGCCTGTCATTGCGCCGCTATCTGCCGGCGCTCTTTCTCCTCGGCCTGAGCTGGGCCTGCCTGT
CGGCATACTGGGCACTGGAGGAGCGCCTGCCCGCCGGACTCGATGGCCGCACCCTGTGGCTGGAGGGGCAGGTGTCGGGG
CTGCCGGAGCGGGTCGACGGCACGCTGCGCTTCCAACTGGAGGACGCCTTCTCCCGGCGTGCTGAACTGCCCCGGCGACT
GCGCCTGGCCTGGCACGCCGCGCCGGAGATCCGTGCCGGGGAGCGCTGGCGTCTGGCGGTCACCCTCAAGCGTCCGCGCG
GTCTGGCCAATCCGCAGGGGTTCGATTACGAAGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACCGGTACGGTGAAGGCA
GGGGAGCGGCTCGGGGCACCGGATGCTGCCGATGGCTGGCGCGACAGCCTGCGTCAGCGCCTGCGGCAGGTCGATGCCCT
GGGCCGTGCAGGCGCGCTCGCCGCGCTGGTGGTGGGCGATGCTTCCGGGCTGAGTGCGGCGGACTGGAAGCTCCTGCAGG
ATACCGGCACCGTGCATCTAATGGTAATCTCCGGGCAGCATGTCGGCCTGCTTGCCGGCCTGGTCTACGGACTGATCGCC
CTGCTGGCACGGCATGGCGTGTGGCCGCGCGCTCTGCCATGGTTGCCCTGTGCCTGTGGCCTGGCTCTTGCCTCCGCACT
GGGTTATGGCTGGCTGGCGGGCTTTGGCGTGCCGGTGCAGCGGGCTTGCGCCATGGTTGCCGTGGTGCTGCTCTGGCGCC
TGCGTTTTCGCCATCTGGGTTTCTGGCTGTCCCTTCTGATGGCACTGGATGGCGTGCTGCTGCTCGAGCCCCTGGCCAGT
CTGCAGCCAGGGTTCTGGCTGTCGTTCGGCGCTGTGGCGATTCTCGTCCTGGCCTTCGGCGGCCGGCTGGGCGCCTGGCC
ATGGCGGCAGACCCTGTGGCGGGCTCAATGGACCTGCGCGCTGGGGCTGCTGCCACTGCTGCTGGCCCTGGGGCTGCCGA
TCAGTCTCAGCGGTCCGCTGGCCAATCTGGTCGCGGTGCCCTGGGTCAGCCTCGCGGTGGTGCCACTGGCGTTGCTCGGA
ACCCTGCTGCTGCCCTTGCCGGCAATAGGCGAGGGGCTGCTCTGGCTGGCCGGCGCCTTGCTGGCAGCACTGTTCTGGCT
GTTCGGCACGATCGCCGGCGGCGTACCGGCCTGGCTGCCCCATGAGGTGCCGATCTGGAGCTGGCTGCTGGCGCTGCTCG
GAATCCTGCTGATCCTGCTGCCGGCAGGTGTGCCGCTGCGTGCCCTGGGGCTGGCGATGCTGCTGCCCCTGGCATTTCCA
CCGCAGGCGCGAATCCCTCATGGCCGGGCCGATGTCTGGGTCCTGGATGTCGGGCAGGGCCTCGCCGTGCTGCTGCGCAC
CCGCGAGCATAGCCTGCTCTATGACGCAGGCCCGCGCTTCGGCGATTTCGACATGGGCGAGCGGGTAGTCCTGCCTTCGC
TGCGCAGCCTTGGCGTGACCCGTCTGGATCGTCTGCTGCTCAGTCATGCCGATGCTGACCACGCCGGTGGTGCCCTGGCC
GTGCAGCGCGGTCTGCCGCTGGGCGAGGTCGTCGCCGGCGAGGCGCAGGCACTGCCGGCGCCGCTCGGCGCATGGCCTTG
CGCCAGCCGAAACTGGGACTGGGATGGCGTGCGTTTCGCCACCTGGCACTGGACTGCCGTGCAGGAGGGCAACCGGGCTT
CTTGCGTGCTGTTGGTGGAGGCTGGTGGCGAGCGCCTGCTGCTGACCGGAGATATCGATGTCGCTGCCGAGCGGGCACTG
CTCGACAGCCATCCGGACTGGCGCGCCGACTGGCTGTTGGCGCCTCACCACGGCAGCCGCAGTTCGTCCTCGCCGGCTCT
GCTCGACGCCCTGGCGCCGCGTGCGGTGCTGATCTCGCGCAGCTGGCACAACGGCTTCGGCCATCCGCATCCGGAGGTCG
TGGCGCGCTATCGAAAGCTGCCGGCCGTGATCTACGATACCGCCCGCCAAGGTGCCCTGCAGTTCCGCCTGGGCGACTGG
GGCAGGGCTCGCGGGCTGCGCGAGGAGTCCCGCTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(196-461)

Domain of unknown function (DUF4131) (DUF4131)

(17-163)

Metallo-beta-lactamase superfamily (Lactamase_B)

(496-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

65.254

96.196

0.628
  comA Ralstonia pseudosolanacearum GMI1000

35.242

100

0.376

Multiple sequence alignment