Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   FDZ14_RS01450 Genome accession   NZ_CP045272
Coordinates   160509..160871 (+) Length   120 a.a.
NCBI ID   WP_016765913.1    Uniprot ID   A0A1I2XGS5
Organism   Priestia megaterium strain FDU301     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 155509..165871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDZ14_RS01420 (FDZ14_01425) - 155697..156698 (+) 1002 WP_013085455.1 rod shape-determining protein -
  FDZ14_RS01425 (FDZ14_01430) - 156813..157637 (+) 825 WP_047931254.1 flagellar hook-basal body protein -
  FDZ14_RS01430 (FDZ14_01435) - 157661..158482 (+) 822 WP_171776508.1 flagellar hook-basal body protein -
  FDZ14_RS01435 (FDZ14_01440) fabZ 158566..159000 (+) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  FDZ14_RS01440 (FDZ14_01445) - 159029..159451 (-) 423 WP_034648293.1 helix-turn-helix transcriptional regulator -
  FDZ14_RS01445 (FDZ14_01450) - 159975..160412 (-) 438 WP_013085451.1 YwpF-like family protein -
  FDZ14_RS01450 (FDZ14_01455) ssbB 160509..160871 (+) 363 WP_016765913.1 single-stranded DNA-binding protein Machinery gene
  FDZ14_RS01455 (FDZ14_01460) - 161389..162435 (-) 1047 WP_171776509.1 C40 family peptidase -
  FDZ14_RS01460 (FDZ14_01465) - 162733..165363 (-) 2631 WP_171776510.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13472.19 Da        Isoelectric Point: 7.1647

>NTDB_id=393037 FDZ14_RS01450 WP_016765913.1 160509..160871(+) (ssbB) [Priestia megaterium strain FDU301]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSGFSSFDSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=393037 FDZ14_RS01450 WP_016765913.1 160509..160871(+) (ssbB) [Priestia megaterium strain FDU301]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACAAAAAAACCTGAGCTTAGATATACCCATGAAGGGATTGCAGTATC
TACTATTACTTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACGGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGTGTAGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCTGTTAAGTTTTTAAGTGGAAAGCC
ATCCGGTTTTTCTTCATTTGATTCAAATCAACAAGAAGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I2XGS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.813

89.167

0.533
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508
  ssb Latilactobacillus sakei subsp. sakei 23K

52.83

88.333

0.467

Multiple sequence alignment