Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | GDV60_RS23050 | Genome accession | NZ_CP045254 |
| Coordinates | 5219565..5220437 (+) | Length | 290 a.a. |
| NCBI ID | WP_159908855.1 | Uniprot ID | A0AAJ4BB24 |
| Organism | Pseudomonas sp. DTU12.1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5214565..5225437
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GDV60_RS23020 (GDV60_23650) | nadC | 5214775..5215623 (+) | 849 | WP_159908847.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GDV60_RS23025 (GDV60_23655) | - | 5215690..5215995 (-) | 306 | WP_159908849.1 | DUF6388 family protein | - |
| GDV60_RS23035 (GDV60_23665) | - | 5216244..5217650 (-) | 1407 | WP_159908851.1 | O-antigen ligase | - |
| GDV60_RS23040 (GDV60_23670) | - | 5217728..5218138 (-) | 411 | WP_029291989.1 | pilin | - |
| GDV60_RS23045 (GDV60_23675) | pilC | 5218342..5219562 (+) | 1221 | WP_159908853.1 | type II secretion system F family protein | Machinery gene |
| GDV60_RS23050 (GDV60_23680) | pilD | 5219565..5220437 (+) | 873 | WP_159908855.1 | A24 family peptidase | Machinery gene |
| GDV60_RS23055 (GDV60_23685) | coaE | 5220434..5221057 (+) | 624 | WP_159908857.1 | dephospho-CoA kinase | - |
| GDV60_RS23060 (GDV60_23690) | yacG | 5221054..5221257 (+) | 204 | WP_092238375.1 | DNA gyrase inhibitor YacG | - |
| GDV60_RS23065 (GDV60_23695) | - | 5221254..5221469 (-) | 216 | WP_029292000.1 | hypothetical protein | - |
| GDV60_RS23070 (GDV60_23700) | - | 5221533..5222222 (-) | 690 | WP_029292001.1 | energy-coupling factor ABC transporter permease | - |
| GDV60_RS23075 (GDV60_23705) | - | 5222219..5222710 (-) | 492 | WP_169390310.1 | FAD/FMN-containing dehydrogenase | - |
| GDV60_RS23080 (GDV60_23710) | - | 5222789..5223418 (+) | 630 | WP_029292005.1 | DUF1780 domain-containing protein | - |
| GDV60_RS23085 (GDV60_23715) | - | 5223458..5223631 (+) | 174 | WP_104910930.1 | DUF3094 family protein | - |
| GDV60_RS23090 (GDV60_23720) | - | 5223692..5224990 (+) | 1299 | WP_159908859.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32021.16 Da Isoelectric Point: 7.3429
>NTDB_id=392962 GDV60_RS23050 WP_159908855.1 5219565..5220437(+) (pilD) [Pseudomonas sp. DTU12.1]
MTLDQLLILHPWLFVWAALVLGLIVGSFLNVLVWRLPKMLERDWRAQAHEILGLPPEPGGPTYNLLHPNSCCPHCSTPIR
PWENIPVISYLLLRGRCARCHGSISPRYPLTELACGLLSAFIAWHYGFGWPAAGVLLLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLILNYFELYVTLPDAVLGAVAGYLSLWSVFWLFKLCTGKDGMGYGDFKLLALLGAWGGWQILPLTLLLASLVG
AIAGVIVLRMRNAQTSVPLPFGPYLAIAGWIALLWGGQITDFYLQSVGFK
MTLDQLLILHPWLFVWAALVLGLIVGSFLNVLVWRLPKMLERDWRAQAHEILGLPPEPGGPTYNLLHPNSCCPHCSTPIR
PWENIPVISYLLLRGRCARCHGSISPRYPLTELACGLLSAFIAWHYGFGWPAAGVLLLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLILNYFELYVTLPDAVLGAVAGYLSLWSVFWLFKLCTGKDGMGYGDFKLLALLGAWGGWQILPLTLLLASLVG
AIAGVIVLRMRNAQTSVPLPFGPYLAIAGWIALLWGGQITDFYLQSVGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=392962 GDV60_RS23050 WP_159908855.1 5219565..5220437(+) (pilD) [Pseudomonas sp. DTU12.1]
ATGACCCTGGACCAACTCCTGATCCTCCATCCCTGGTTGTTCGTCTGGGCAGCACTGGTGCTCGGGCTGATCGTCGGCAG
CTTCCTCAACGTGCTGGTCTGGCGCCTGCCAAAAATGCTCGAACGGGACTGGCGCGCCCAGGCCCATGAGATACTCGGCC
TGCCTCCGGAGCCCGGTGGCCCGACCTATAACCTGTTGCACCCCAACTCCTGTTGCCCGCATTGTTCGACGCCGATTCGC
CCATGGGAAAATATCCCGGTGATCAGTTATCTGCTGCTCAGGGGGCGCTGCGCGCGATGCCACGGCTCCATCAGCCCGCG
CTACCCGCTCACCGAACTGGCCTGCGGGCTGCTCTCGGCATTTATCGCCTGGCACTACGGCTTCGGCTGGCCGGCCGCTG
GAGTGCTGCTCTTGAGCTGGGGCTTGCTAGCCATGAGCCTGATTGATGCCGACCACCAGCTATTACCGGATGTGCTGGTG
CTGCCACTGCTGTGGCTGGGGCTGATCCTCAATTACTTCGAGCTGTATGTAACGCTGCCCGATGCAGTGCTGGGCGCGGT
TGCCGGGTACCTGAGCCTGTGGTCGGTGTTCTGGCTATTCAAGCTGTGCACCGGCAAGGACGGCATGGGCTATGGCGACT
TCAAGCTGCTAGCCCTGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGTTGCTGGCGTCGCTGGTGGGT
GCGATCGCAGGGGTGATTGTGTTGCGCATGCGTAACGCGCAGACCTCGGTGCCCCTGCCTTTTGGCCCCTATCTGGCGAT
TGCCGGCTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAAATGA
ATGACCCTGGACCAACTCCTGATCCTCCATCCCTGGTTGTTCGTCTGGGCAGCACTGGTGCTCGGGCTGATCGTCGGCAG
CTTCCTCAACGTGCTGGTCTGGCGCCTGCCAAAAATGCTCGAACGGGACTGGCGCGCCCAGGCCCATGAGATACTCGGCC
TGCCTCCGGAGCCCGGTGGCCCGACCTATAACCTGTTGCACCCCAACTCCTGTTGCCCGCATTGTTCGACGCCGATTCGC
CCATGGGAAAATATCCCGGTGATCAGTTATCTGCTGCTCAGGGGGCGCTGCGCGCGATGCCACGGCTCCATCAGCCCGCG
CTACCCGCTCACCGAACTGGCCTGCGGGCTGCTCTCGGCATTTATCGCCTGGCACTACGGCTTCGGCTGGCCGGCCGCTG
GAGTGCTGCTCTTGAGCTGGGGCTTGCTAGCCATGAGCCTGATTGATGCCGACCACCAGCTATTACCGGATGTGCTGGTG
CTGCCACTGCTGTGGCTGGGGCTGATCCTCAATTACTTCGAGCTGTATGTAACGCTGCCCGATGCAGTGCTGGGCGCGGT
TGCCGGGTACCTGAGCCTGTGGTCGGTGTTCTGGCTATTCAAGCTGTGCACCGGCAAGGACGGCATGGGCTATGGCGACT
TCAAGCTGCTAGCCCTGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGTTGCTGGCGTCGCTGGTGGGT
GCGATCGCAGGGGTGATTGTGTTGCGCATGCGTAACGCGCAGACCTCGGTGCCCCTGCCTTTTGGCCCCTATCTGGCGAT
TGCCGGCTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
54.545 |
98.621 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
52.5 |
96.552 |
0.507 |
| pilD | Neisseria gonorrhoeae MS11 |
51.111 |
93.103 |
0.476 |
| pilD | Acinetobacter baumannii D1279779 |
49.635 |
94.483 |
0.469 |
| pilD | Acinetobacter nosocomialis M2 |
48.905 |
94.483 |
0.462 |