Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LV515_RS00040 Genome accession   NZ_CP045240
Coordinates   9281..9826 (+) Length   181 a.a.
NCBI ID   WP_003716303.1    Uniprot ID   A0AAW5WQW3
Organism   Limosilactobacillus vaginalis strain LV515     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1494..18038 9281..9826 within 0


Gene organization within MGE regions


Location: 1494..18038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV515_RS00010 (LV515_00010) dnaN 1494..2633 (+) 1140 WP_003716309.1 DNA polymerase III subunit beta -
  LV515_RS00015 (LV515_00015) yaaA 2845..3066 (+) 222 WP_003716308.1 S4 domain-containing protein YaaA -
  LV515_RS00020 (LV515_00020) recF 3075..4199 (+) 1125 WP_003716307.1 DNA replication/repair protein RecF -
  LV515_RS00025 (LV515_00025) gyrB 4196..6141 (+) 1946 Protein_4 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  LV515_RS00030 (LV515_00030) gyrA 6230..8749 (+) 2520 WP_003716305.1 DNA gyrase subunit A -
  LV515_RS00035 (LV515_00035) rpsF 8948..9244 (+) 297 WP_003716304.1 30S ribosomal protein S6 -
  LV515_RS00040 (LV515_00040) ssb 9281..9826 (+) 546 WP_003716303.1 single-stranded DNA-binding protein Machinery gene
  LV515_RS00045 (LV515_00045) rpsR 9859..10095 (+) 237 WP_003716302.1 30S ribosomal protein S18 -
  LV515_RS00050 (LV515_00050) - 10270..12294 (+) 2025 WP_003716301.1 DHH family phosphoesterase -
  LV515_RS00055 (LV515_00055) rplI 12300..12752 (+) 453 WP_040530596.1 50S ribosomal protein L9 -
  LV515_RS00060 (LV515_00060) dnaB 12780..14180 (+) 1401 WP_003716299.1 replicative DNA helicase -
  LV515_RS00065 (LV515_00065) - 14341..15543 (+) 1203 WP_003716298.1 MFS transporter -
  LV515_RS00070 (LV515_00070) - 15707..16696 (+) 990 WP_003716297.1 asparaginase -
  LV515_RS00075 (LV515_00075) - 16908..18038 (+) 1131 WP_152378505.1 IS30 family transposase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20030.51 Da        Isoelectric Point: 4.4652

>NTDB_id=392864 LV515_RS00040 WP_003716303.1 9281..9826(+) (ssb) [Limosilactobacillus vaginalis strain LV515]
MINRAVLTGRLTRDPELRYTTSGTAVVSFTLAVDRQFRNQNGDRDADFINCVIWRKSAENFSNFTHKGSLVGIEGRIQTR
NYENQQGNRVYVTEVVVDNFALLEPRQNGGGQQYGNQQPFGGQGQPQYNDNQPQPGNNAPQSNSSNGFGGNNNQPSQPDS
QFPNNGDDGQSIDLSDDELPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=392864 LV515_RS00040 WP_003716303.1 9281..9826(+) (ssb) [Limosilactobacillus vaginalis strain LV515]
ATGATTAATCGTGCAGTACTTACTGGACGCTTAACAAGAGATCCTGAGTTGCGGTACACAACCAGTGGAACAGCTGTTGT
ATCATTTACATTAGCTGTTGATCGTCAATTCCGAAACCAAAATGGGGATCGGGATGCTGACTTTATCAATTGCGTCATTT
GGCGTAAGTCTGCTGAAAACTTTAGTAACTTTACTCATAAGGGATCCTTAGTTGGTATCGAAGGACGGATTCAAACCCGG
AATTACGAAAACCAACAAGGTAACCGAGTTTATGTTACCGAAGTTGTTGTCGATAATTTTGCACTGCTTGAACCACGCCA
AAATGGTGGTGGCCAACAATACGGCAACCAACAACCATTTGGTGGTCAAGGTCAACCGCAGTACAACGATAATCAACCAC
AACCTGGAAATAATGCTCCTCAGTCTAATTCGTCTAATGGCTTTGGTGGTAATAATAACCAACCAAGTCAACCAGATAGC
CAATTTCCTAATAATGGGGACGATGGTCAATCCATTGACTTATCTGATGACGAATTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.043

100

0.613
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.087

100

0.519

Multiple sequence alignment