Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   HO393_RS18075 Genome accession   NZ_CP053605
Coordinates   3738982..3739572 (-) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain NEB_Turbo     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3733982..3744572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HO393_RS18060 (HO393_18065) uhpT 3734622..3736013 (-) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -
  HO393_RS18065 (HO393_18070) uhpC 3736151..3737470 (-) 1320 WP_000936566.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  HO393_RS18070 (HO393_18075) uhpB 3737480..3738982 (-) 1503 WP_001295243.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  HO393_RS18075 (HO393_18080) letA 3738982..3739572 (-) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  HO393_RS18080 (HO393_18085) ilvN 3739648..3739938 (-) 291 WP_001181706.1 acetolactate synthase small subunit -
  HO393_RS18085 (HO393_18090) ilvB 3739942..3741630 (-) 1689 WP_000168475.1 acetolactate synthase large subunit -
  HO393_RS18090 (HO393_18095) ivbL 3741736..3741834 (-) 99 WP_001300753.1 ilvB operon leader peptide IvbL -
  HO393_RS18095 (HO393_18100) tisB 3742399..3742488 (+) 90 WP_001054909.1 type I toxin-antitoxin system toxin TisB -
  HO393_RS23120 ysdE 3742612..3742686 (-) 75 WP_211180519.1 protein YsdE -
  HO393_RS18100 (HO393_18105) emrD 3742768..3743952 (+) 1185 WP_000828746.1 multidrug efflux MFS transporter EmrD -
  HO393_RS18105 (HO393_18110) yidF 3743960..3744457 (-) 498 WP_000148061.1 radical SAM protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=392820 HO393_RS18075 WP_000633668.1 3738982..3739572(-) (letA) [Escherichia coli strain NEB_Turbo]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=392820 HO393_RS18075 WP_000633668.1 3738982..3739572(-) (letA) [Escherichia coli strain NEB_Turbo]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACGATTATGCTCTCCGTT
CACGACAGTCCTGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCACGCGGCTTTCTTTCCAAACGCTGTAGCCCGGATGA
ACTCATTGCTGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GTCAGGACCCGCTAACCAAACGTGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTAGA
GCTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378

Multiple sequence alignment