Detailed information NTG0392763

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GCK66_RS02200
• Genome accession: NZ_CP045220
• Coordinates: 470255..471127 (-)
• Length: 290 a.a.
• NCBI ID: WP_206818893.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain Aer_Brac66
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 465255..476127

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GCK66_RS02175 (GCK66_02200)	-	466991..468175 (+)	1185	WP_206818896.1	tetratricopeptide repeat protein	-
GCK66_RS02180 (GCK66_02205)	mutT	468184..468597 (+)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
GCK66_RS02185 (GCK66_02210)	yacG	468658..468852 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
GCK66_RS02190 (GCK66_02215)	zapD	468862..469584 (-)	723	WP_206818895.1	cell division protein ZapD	-
GCK66_RS02195 (GCK66_02220)	coaE	469622..470236 (-)	615	WP_206818894.1	dephospho-CoA kinase	-
GCK66_RS02200 (GCK66_02225)	pilD	470255..471127 (-)	873	WP_206818893.1	A24 family peptidase	Machinery gene
GCK66_RS02205 (GCK66_02230)	pilC	471150..472391 (-)	1242	WP_206818892.1	type II secretion system F family protein	Machinery gene
GCK66_RS02210 (GCK66_02235)	pilB	472507..474213 (-)	1707	WP_029302067.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
GCK66_RS02215 (GCK66_02240)	tapA	474220..474636 (-)	417	WP_042066959.1	type IVa pilus major pilin TapA	-
GCK66_RS02220 (GCK66_02250)	nadC	474959..475816 (-)	858	WP_206818891.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32522.86 Da
• Isoelectric Point: 6.7408

>NTDB_id=392763 GCK66_RS02200 WP_206818893.1 470255..471127(-) (pilD) [Aeromonas hydrophila strain Aer_Brac66]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEDRYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFPPGWALLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFIPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=392763 GCK66_RS02200 WP_206818893.1 470255..471127(-) (pilD) [Aeromonas hydrophila strain Aer_Brac66]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCATGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCGGAAACACAGCCGCAGCAGGAAGATCGCTACAACCTGATGGTGCCGCGTTCAGCCTGCCCTCATTGCGGCCACGCC
ATCACGGCCATGGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGACGCTGCCGTGAATGCCAGGCACCCATATC
GGCCCGTTATCCTCTGGTGGAATTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCAGCAACATTCCCACCGGGCTGGGCTT
TGCTGGCCGCCCTGCTGCTCACCTGGGTACTGGTGGCGCTTACTTTCATCGATCTGGACAAAATGCTGCTGCCGGACCAG
CTGACCCTGCCACTGTTGTGGGGCGGCCTGCTGTTCAACCTGGCAGGGGGATTTATACCGCTGGCCGATGCGGTGATCGG
CGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGGTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGGATTGGCCTCATTCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTACTT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.189	98.621	0.603
pilD	Vibrio campbellii strain DS40M4	55.594	98.621	0.548
pilD	Acinetobacter baumannii D1279779	53.873	97.931	0.528
pilD	Acinetobacter nosocomialis M2	53.873	97.931	0.528
pilD	Neisseria gonorrhoeae MS11	48.718	94.138	0.459