Detailed information    

insolico Bioinformatically predicted

Overview


Name   crp   Type   Regulator
Locus tag   GA693_RS03215 Genome accession   NZ_CP045198
Coordinates   573155..573859 (-) Length   234 a.a.
NCBI ID   WP_005177031.1    Uniprot ID   A0A6C0Y3U4
Organism   Acinetobacter indicus strain TQ23     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 568155..578859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA693_RS03190 - 568269..569588 (+) 1320 WP_005177019.1 adenylosuccinate synthase -
  GA693_RS03195 - 569725..570510 (+) 786 WP_104469896.1 M48 family metallopeptidase -
  GA693_RS03200 - 570599..570907 (+) 309 WP_005177024.1 hypothetical protein -
  GA693_RS03205 - 571070..571852 (+) 783 WP_005177027.1 M48 family metallopeptidase -
  GA693_RS03210 - 571935..572984 (-) 1050 WP_160241449.1 NADP(H)-dependent aldo-keto reductase -
  GA693_RS03215 crp 573155..573859 (-) 705 WP_005177031.1 cAMP-activated global transcriptional regulator CRP Regulator
  GA693_RS03220 - 574007..574429 (+) 423 WP_005177032.1 OsmC family protein -
  GA693_RS03225 clpB 574754..577333 (+) 2580 WP_160241448.1 ATP-dependent chaperone ClpB -

Sequence


Protein


Download         Length: 234 a.a.        Molecular weight: 26315.89 Da        Isoelectric Point: 4.6470

>NTDB_id=392599 GA693_RS03215 WP_005177031.1 573155..573859(-) (crp) [Acinetobacter indicus strain TQ23]
MTSNFSQLSTDALSPGQLPDSVKALLKRAYINRYPKRTTIVDAGSESKSLYLILKGSVSIILREDDDREIVVAYLNPGDF
FGEMGLFEANPQRTAEVRTRDVCEIAEVTYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEQNDAADEQFDDE

Nucleotide


Download         Length: 705 bp        

>NTDB_id=392599 GA693_RS03215 WP_005177031.1 573155..573859(-) (crp) [Acinetobacter indicus strain TQ23]
ATGACTTCAAACTTTTCACAATTAAGCACCGATGCCCTGTCTCCTGGTCAATTACCAGATTCAGTCAAGGCATTATTAAA
ACGTGCATATATCAACCGTTATCCGAAACGGACCACAATTGTTGATGCGGGGTCTGAATCAAAATCACTTTATTTGATTC
TGAAAGGATCTGTTTCCATCATTCTGCGTGAAGATGATGATCGCGAAATTGTTGTGGCGTATTTGAATCCGGGTGACTTC
TTTGGGGAAATGGGTCTATTCGAAGCAAATCCACAACGTACTGCAGAAGTACGCACACGTGACGTTTGTGAAATTGCCGA
AGTGACTTATGAAAACTTCCACGAGCTCAGCAAGCAATATCCAGATCTAAGCTATGCGGTATTTGCCCAACTGGTGCGCC
GTTTAAAAAATACCACGCGTAAAGTGACCGATCTGGCCTTCATTGATGTTTCAGGCCGTATTGCGCGTTGTCTGATTGAC
CTGTCTGCGCAGCCTGAAGCCATGATTTTGCCAAATGGCCGTCAAATCCGCATTACCCGTCAGGAAATTGGCCGCATTGT
TGGCTGTTCACGTGAAATGGTCGGCCGTGTTCTGAAAACCCTGGAAGAACAAGGCATGATCGAAACTGATGGTAAAGCCA
TTCTGATTTTTGATGCCTCTTTAGAGCAAAATGATGCAGCAGATGAACAGTTTGATGATGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A6C0Y3U4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.026

100

0.91

  crp Vibrio cholerae strain A1552

46.829

87.607

0.41

  crp Haemophilus influenzae Rd KW20

47.179

83.333

0.393


Multiple sequence alignment