Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   GA636_RS12885 Genome accession   NZ_CP045135
Coordinates   2677651..2680053 (-) Length   800 a.a.
NCBI ID   WP_168396351.1    Uniprot ID   -
Organism   Acinetobacter indicus strain XG01     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2672651..2685053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA636_RS12860 purM 2672974..2674044 (+) 1071 WP_005176576.1 phosphoribosylformylglycinamidine cyclo-ligase -
  GA636_RS12865 purN 2674051..2674680 (+) 630 WP_016660003.1 phosphoribosylglycinamide formyltransferase -
  GA636_RS12870 - 2674757..2675560 (-) 804 WP_005176572.1 alpha/beta fold hydrolase -
  GA636_RS12875 sppA 2675557..2676582 (-) 1026 WP_075168251.1 signal peptide peptidase SppA -
  GA636_RS12880 - 2676713..2677654 (+) 942 WP_160232538.1 lysophospholipid acyltransferase family protein -
  GA636_RS12885 comA/comEC 2677651..2680053 (-) 2403 WP_168396351.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GA636_RS12890 lolD 2680139..2680822 (-) 684 WP_005176563.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  GA636_RS12895 - 2680815..2682050 (-) 1236 WP_005176562.1 lipoprotein-releasing ABC transporter permease subunit -
  GA636_RS12900 - 2682076..2682642 (+) 567 WP_005176561.1 PilZ domain-containing protein -
  GA636_RS12905 - 2682630..2683553 (-) 924 WP_005176560.1 DMT family transporter -
  GA636_RS12910 - 2683559..2684026 (-) 468 WP_160232612.1 YaiI/YqxD family protein -

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 91490.60 Da        Isoelectric Point: 7.5370

>NTDB_id=392235 GA636_RS12885 WP_168396351.1 2677651..2680053(-) (comA/comEC) [Acinetobacter indicus strain XG01]
MFKIMGAGWIVGIACMGKTLWPMLDFPLWLSGLLLIILLLQQIAALHWSHLGIQLINTCVAFVITFLLGLNFAQNQLQER
LIFRELTRQPAEVVVYVQQINQLGSSQLRQPVQVLNRHSQPVQWLALLPAEQELQLGRYYRLQGQTLPAHSFAVPGAFDV
EQWYLQQNIMSGFQVQSIVELTESELYRLGFGAHLRQHQQLWPQFKLWIETQRLQIRDFIQQQALQHPGLILALLTGDKS
LLDEATEQQFQRFGMSHLLAISGPHVLIFAAMLCFVLQRLVTRYWPELYAQLPRSYLLLLPFMGCVFVYCAYVGFEIPAL
RTLLICLVAGACLLLKQPIQPLSLLIGSASLLLLLDPLSVLSAAFWLSYGACFVLLRIYQTLRQQPVHPQQTLMQKLWQG
FRLLFESQWKIFIALFPLMIIFFKQIAWIAPLSNLLAIPWIGLVIVPLDILAGLSFYLAEPLSQLLFQLNDLALSLLLGC
LQLLDLLFAPQLIPVALSPPMLLSLVLGLMILFLPAGLVPKVWSALCLLPLLFQDQFSRQVELTVLDVGQGQAIFLRYRE
HSMMIDMGGHYDEQKWSIGRQIIQPFLSVKGVQQLDYLWLTHLDQDHSGAYQTLKPQLQVQQVYANAQLEVNPHSHFDYC
QQGQQWQWQPGIQIQVLSPKPEQLNPVEQQKNESSCVLLVEFAQAQPYSRFLLMGDAGWPTEYQLLQDYPDLKVDVLVLG
HHGSRHSSSYQFLKQLEPKLAIASAGLNNRYGHPSTQVKARLNALKIPLWQTAQQGSIQFYPTENEVLPYRHMRVWLRRD

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=392235 GA636_RS12885 WP_168396351.1 2677651..2680053(-) (comA/comEC) [Acinetobacter indicus strain XG01]
ATGTTCAAAATCATGGGTGCCGGCTGGATTGTAGGTATTGCCTGTATGGGCAAAACGCTATGGCCGATGCTGGATTTCCC
GCTCTGGTTGTCAGGCCTGTTACTGATTATCCTGCTTTTACAGCAAATAGCTGCTTTACATTGGTCCCATCTGGGCATCC
AATTGATTAATACCTGTGTGGCATTTGTCATTACATTTTTGTTGGGGCTGAATTTTGCCCAAAACCAGTTGCAAGAGCGG
TTGATATTTCGTGAACTGACCCGCCAGCCGGCAGAGGTGGTGGTCTATGTCCAGCAAATCAATCAGCTGGGTAGCAGCCA
GCTCCGGCAACCGGTTCAGGTGCTGAACCGGCATAGCCAGCCGGTGCAATGGCTGGCCTTGCTGCCGGCTGAACAGGAAC
TACAGCTGGGGCGTTATTATCGTTTACAGGGGCAGACCTTGCCGGCGCACAGTTTTGCCGTTCCGGGTGCGTTTGATGTA
GAGCAGTGGTATCTCCAGCAAAATATCATGAGCGGCTTTCAGGTCCAGTCGATTGTGGAACTGACTGAATCGGAACTGTA
TCGGCTGGGATTTGGGGCACATTTAAGACAGCATCAGCAACTCTGGCCGCAATTTAAATTGTGGATCGAAACACAGCGTT
TACAGATTCGTGACTTTATCCAGCAGCAGGCATTGCAGCATCCCGGCTTAATACTGGCACTGCTGACTGGCGATAAAAGT
TTACTCGATGAAGCCACCGAGCAGCAGTTTCAGCGTTTCGGGATGAGTCATTTGCTGGCGATTTCCGGGCCGCATGTGCT
GATTTTTGCCGCCATGCTGTGTTTTGTGCTGCAGCGCCTGGTCACTCGCTATTGGCCCGAATTATATGCGCAATTGCCCC
GAAGTTATCTGCTGTTGCTGCCGTTTATGGGCTGTGTATTTGTATATTGTGCCTATGTTGGGTTTGAAATTCCTGCGCTC
AGGACTTTACTGATTTGTCTGGTGGCAGGCGCCTGCCTGTTGCTAAAGCAGCCGATACAGCCGCTGTCTTTGCTGATTGG
TAGTGCTTCGTTATTGCTGCTGCTTGATCCGTTGAGTGTGCTGTCGGCGGCATTCTGGCTGTCTTATGGCGCCTGCTTTG
TGCTGTTAAGGATTTACCAGACCCTCCGGCAACAACCGGTGCATCCGCAGCAGACGTTGATGCAGAAATTGTGGCAGGGC
TTCCGGCTGTTATTTGAATCGCAATGGAAAATTTTTATTGCGCTGTTTCCGCTGATGATCATCTTCTTCAAGCAGATTGC
CTGGATTGCGCCGCTGAGTAATCTATTGGCCATTCCCTGGATCGGTCTGGTGATTGTACCGCTGGATATTCTGGCCGGTT
TAAGTTTTTATCTGGCGGAACCGCTGAGCCAGTTGCTGTTTCAGCTCAATGACTTGGCGCTAAGTCTGTTATTGGGTTGT
TTGCAGTTGCTGGATCTGCTGTTTGCACCACAACTGATTCCGGTTGCGCTGAGTCCACCGATGCTGCTGAGTCTGGTGCT
GGGACTGATGATTTTATTTCTTCCCGCAGGTCTAGTGCCTAAAGTCTGGTCAGCGCTGTGTTTATTGCCTTTGCTGTTTC
AGGACCAGTTTTCTCGGCAGGTGGAACTTACTGTGCTGGATGTTGGGCAGGGGCAGGCAATCTTTTTACGCTATCGTGAA
CACAGCATGATGATTGATATGGGCGGTCATTATGATGAACAGAAATGGAGTATCGGCCGGCAGATTATCCAGCCCTTTTT
AAGTGTCAAAGGCGTGCAGCAGTTAGATTATTTATGGTTGACCCATCTGGATCAGGATCATAGCGGCGCTTATCAGACCT
TAAAGCCACAGTTACAGGTGCAACAGGTCTATGCCAATGCTCAGCTTGAAGTAAATCCTCATAGCCATTTTGACTATTGC
CAGCAAGGACAGCAATGGCAGTGGCAGCCGGGCATCCAGATACAGGTACTCTCTCCGAAACCGGAGCAGTTAAATCCTGT
AGAACAGCAGAAAAATGAAAGTTCCTGTGTGCTGCTGGTCGAGTTTGCACAGGCTCAGCCTTATTCTCGCTTTTTATTGA
TGGGTGATGCAGGCTGGCCGACTGAATATCAGTTATTACAGGATTATCCGGATTTAAAAGTGGATGTGCTGGTGCTTGGC
CATCATGGTAGCCGGCACAGTTCATCTTACCAGTTTTTAAAACAGCTGGAGCCTAAACTGGCAATTGCATCGGCGGGGCT
GAATAACCGTTATGGCCATCCGAGCACGCAGGTAAAAGCCCGACTGAACGCCTTAAAAATTCCCTTATGGCAGACCGCGC
AGCAGGGTAGCATCCAGTTTTATCCCACTGAGAATGAGGTGCTACCGTACCGGCATATGCGGGTTTGGCTGCGGCGTGAT
TAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(234-515)

Domain of unknown function (DUF4131) (DUF4131)

(25-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Acinetobacter baumannii D1279779

48.039

100

0.49
  comA/comEC Acinetobacter baylyi ADP1

48.089

100

0.488
  comA/comEC Acinetobacter baumannii strain A118

47.549

100

0.485

Multiple sequence alignment