Detailed information    

insolico Bioinformatically predicted

Overview


Name   crp   Type   Regulator
Locus tag   GA636_RS12095 Genome accession   NZ_CP045135
Coordinates   2513809..2514513 (+) Length   234 a.a.
NCBI ID   WP_005177031.1    Uniprot ID   A0A6C0Y3U4
Organism   Acinetobacter indicus strain XG01     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2508809..2519513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA636_RS12085 clpB 2510334..2512913 (-) 2580 WP_005177034.1 ATP-dependent chaperone ClpB -
  GA636_RS12090 - 2513239..2513661 (-) 423 WP_005177032.1 OsmC family protein -
  GA636_RS12095 crp 2513809..2514513 (+) 705 WP_005177031.1 cAMP-activated global transcriptional regulator CRP Regulator
  GA636_RS12100 - 2514684..2515733 (+) 1050 WP_075166669.1 NADP(H)-dependent aldo-keto reductase -
  GA636_RS12105 - 2515822..2516604 (-) 783 WP_075166668.1 M48 family metallopeptidase -
  GA636_RS12110 - 2516767..2517075 (-) 309 WP_104472979.1 hypothetical protein -
  GA636_RS12115 - 2517164..2517949 (-) 786 WP_075166666.1 M48 family metallopeptidase -
  GA636_RS12120 - 2518086..2519405 (-) 1320 WP_005177019.1 adenylosuccinate synthase -

Sequence


Protein


Download         Length: 234 a.a.        Molecular weight: 26315.89 Da        Isoelectric Point: 4.6470

>NTDB_id=392233 GA636_RS12095 WP_005177031.1 2513809..2514513(+) (crp) [Acinetobacter indicus strain XG01]
MTSNFSQLSTDALSPGQLPDSVKALLKRAYINRYPKRTTIVDAGSESKSLYLILKGSVSIILREDDDREIVVAYLNPGDF
FGEMGLFEANPQRTAEVRTRDVCEIAEVTYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEQNDAADEQFDDE

Nucleotide


Download         Length: 705 bp        

>NTDB_id=392233 GA636_RS12095 WP_005177031.1 2513809..2514513(+) (crp) [Acinetobacter indicus strain XG01]
ATGACTTCAAACTTTTCACAATTAAGCACCGATGCCCTGTCTCCTGGTCAATTACCAGATTCAGTCAAGGCATTATTAAA
ACGTGCATATATCAACCGTTATCCGAAACGGACAACAATTGTTGATGCGGGGTCTGAATCAAAATCACTTTATTTGATTC
TGAAAGGATCTGTTTCCATCATTCTGCGTGAAGATGATGATCGCGAAATTGTTGTGGCGTATTTGAATCCAGGTGACTTC
TTTGGGGAAATGGGTCTATTCGAAGCAAATCCACAACGTACTGCAGAAGTACGCACACGTGACGTTTGTGAAATTGCCGA
AGTGACTTATGAAAACTTCCACGAACTCAGCAAGCAATATCCAGATTTAAGCTATGCGGTATTTGCCCAGCTGGTGCGCC
GTTTAAAAAATACCACGCGTAAAGTGACCGATCTGGCCTTCATTGATGTTTCAGGCCGTATTGCCCGTTGTCTGATTGAC
CTGTCTGCGCAGCCTGAAGCCATGATTTTGCCAAATGGCCGTCAAATCCGCATTACCCGTCAGGAAATTGGCCGCATTGT
TGGCTGTTCACGTGAAATGGTCGGCCGTGTTCTGAAAACCCTGGAAGAACAAGGCATGATCGAAACTGATGGTAAAGCCA
TTCTGATTTTTGATGCCTCTTTAGAGCAAAATGATGCAGCAGATGAACAGTTTGATGATGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A6C0Y3U4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.026

100

0.91

  crp Vibrio cholerae strain A1552

46.829

87.607

0.41

  crp Haemophilus influenzae Rd KW20

47.179

83.333

0.393


Multiple sequence alignment