Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   GA721_RS01290 Genome accession   NZ_CP045131
Coordinates   278974..281112 (+) Length   712 a.a.
NCBI ID   WP_168394005.1    Uniprot ID   -
Organism   Acinetobacter indicus strain TQ18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 273974..286112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA721_RS01270 pilM 275977..277035 (+) 1059 WP_075174946.1 pilus assembly protein PilM Machinery gene
  GA721_RS01275 pilN 277035..277670 (+) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  GA721_RS01280 pilO 277667..278386 (+) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  GA721_RS01285 pilP 278386..278913 (+) 528 WP_104489345.1 pilus assembly protein PilP Machinery gene
  GA721_RS01290 pilQ 278974..281112 (+) 2139 WP_168394005.1 type IV pilus secretin PilQ family protein Machinery gene
  GA721_RS01295 aroK 281149..281691 (+) 543 WP_104487954.1 shikimate kinase AroK -
  GA721_RS01300 aroB 281714..282796 (+) 1083 WP_160242747.1 3-dehydroquinate synthase -
  GA721_RS01305 - 282809..283645 (+) 837 WP_160242748.1 hypothetical protein -

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 76828.00 Da        Isoelectric Point: 5.0549

>NTDB_id=392161 GA721_RS01290 WP_168394005.1 278974..281112(+) (pilQ) [Acinetobacter indicus strain TQ18]
MNNLFRQFSMGAVAMAVMQVANAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPAAYQLEQPSRLVLDFDKAQQSLKQASI
PVATREASSVEVSSDAQRARLTVNLAEAGAFTTRVEGNTFILKINSTQAAATPVAVQQTAQGISNIGFQRGAEGEGQVVI
DLAGSNTPVDVQQQGSKIIVRTLGNKIPAHLARRLNVNDFATPVSTIDAQNDGGNGVITIQSAGSYEYMAYQAENKLTIS
LKRPVDKNPFKPRAAQSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIILKTKNLD
KRRNGNVIWIAPVAELIKAEEEEAKAIAQSVKLAPLQTEYIQLNYAKAADIEKLITDGKNASNSRGGTNSGSGADPLGDS
VGSLLSPRGTVSVDPRTNTLIINDTAQKIDQIRGMIDLLDVSVKQVMIEARIVRATTDFTKEMGVKWGILSQGIMNNNHL
LVGGSDTTLWNLREPEFDDERGGYTYEIERPQNLNVDLGVTSPGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPK
VLTADKQQAKVASGTQIPYQSAEGGGVNAVSTTEFIDATLSLDVTPSITPDGKVQMNLNITSDSPGAPTPTGQLTINKNS
INTNVLVDNGETVVLGGIFEQQTANQQTKVPFLGDIPYLGRLFRKDIKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=392161 GA721_RS01290 WP_168394005.1 278974..281112(+) (pilQ) [Acinetobacter indicus strain TQ18]
ATGAACAATTTGTTCCGTCAGTTTTCAATGGGCGCTGTTGCGATGGCCGTCATGCAAGTGGCCAATGCGCAGGTCAGCAT
TACCAATATTGTACCAATGCAAATTCCAGGACAAGGTACTGAAATTCGTGTCATGTTCAATGGCTTGCCACCTCAGCCTG
CAGCCTATCAGCTTGAGCAGCCATCACGTTTGGTGCTGGATTTTGATAAAGCCCAGCAGAGCTTAAAACAGGCCAGCATT
CCGGTTGCGACCCGGGAAGCCAGCTCGGTTGAGGTCAGTTCCGATGCCCAGCGTGCACGTTTAACGGTTAATCTGGCTGA
AGCGGGTGCTTTTACTACCCGTGTTGAAGGTAATACTTTTATTCTTAAAATTAACAGCACTCAGGCAGCCGCAACACCAG
TAGCTGTACAGCAGACGGCTCAAGGCATATCGAATATCGGCTTTCAGCGTGGTGCAGAAGGGGAAGGTCAGGTGGTAATT
GACCTGGCAGGCAGCAATACCCCGGTCGATGTACAACAGCAAGGCAGTAAAATTATTGTCCGTACCTTGGGCAATAAAAT
TCCTGCACATCTGGCGCGCCGTTTAAACGTCAATGATTTTGCCACCCCGGTATCTACCATTGATGCGCAAAATGATGGTG
GCAATGGGGTAATTACTATTCAGTCTGCCGGAAGCTATGAATACATGGCGTACCAGGCAGAAAATAAACTGACCATTAGC
CTGAAACGTCCGGTAGATAAGAACCCGTTCAAACCGCGTGCAGCACAAAGCTATACCGGCAAAAAGATTTCTTTAGATTT
CCAGGATATTGAAGTGCGTCGTGTGCTGCAGTTACTGGCTGATTTTACCGGAATTAACATGGTTGCCGCCGATACGGTAC
AAGGCAATATCACCTTACGTCTCAAAGATGTGCCGTGGGATCAGGCGCTGGATATTATTTTAAAAACCAAGAATCTGGAT
AAACGCCGTAACGGCAATGTGATCTGGATTGCACCCGTCGCAGAGCTGATCAAGGCCGAAGAAGAAGAAGCCAAAGCGAT
TGCACAAAGCGTCAAGCTGGCGCCGCTGCAAACCGAATATATCCAGTTAAATTATGCCAAGGCTGCTGATATTGAGAAAC
TGATTACTGATGGTAAAAACGCATCCAATTCTCGAGGCGGCACAAATTCGGGTTCTGGGGCAGATCCACTTGGTGATAGC
GTCGGTAGTCTGCTCAGCCCACGTGGTACAGTGTCAGTTGATCCACGAACCAACACCCTGATTATTAATGATACTGCACA
AAAAATTGACCAGATTCGCGGCATGATTGACTTGCTGGATGTGTCTGTGAAACAGGTGATGATTGAAGCGCGTATTGTGC
GTGCCACCACTGACTTTACCAAAGAGATGGGGGTCAAGTGGGGCATCCTGTCACAAGGGATCATGAATAATAATCATCTT
CTGGTCGGTGGTAGTGATACCACACTGTGGAATTTACGTGAGCCGGAATTTGACGACGAGCGTGGTGGTTATACCTATGA
AATTGAACGTCCACAAAACTTGAATGTCGATTTGGGGGTCACCAGCCCAGGTGCGAGCCGGATTGCTTTTGGTCTCATCA
GCCTGTCTGACTTTATGCTGGATTTAGAACTGTCTGCCCTACAAGCTGATGGTTATGGTGAAGTGATTTCGACACCGAAA
GTACTGACTGCTGATAAGCAGCAGGCCAAAGTGGCTTCAGGTACGCAGATCCCGTATCAGTCTGCTGAAGGTGGTGGTGT
CAATGCGGTGTCCACCACCGAGTTTATTGATGCTACGCTCAGTCTGGACGTAACGCCAAGCATTACCCCGGATGGTAAAG
TGCAGATGAACCTGAATATCACCAGTGATAGCCCGGGAGCACCAACGCCGACCGGTCAGCTGACGATTAACAAAAACTCG
ATCAATACCAATGTACTGGTCGATAATGGTGAAACCGTCGTGCTCGGTGGTATTTTTGAGCAGCAGACAGCCAATCAGCA
AACCAAAGTGCCATTCTTGGGTGATATTCCGTATTTAGGCCGTTTATTCCGTAAAGATATTAAATCGGACAATAAACGTG
AGTTGCTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(290-332)

Bacterial type II/III secretion system short domain (Secretin_N)

(359-445)

Bacterial type II and III secretion system protein (Secretin)

(546-704)

AMIN domain (AMIN)

(40-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

76.593

100

0.777
  pilQ Acinetobacter baumannii strain A118

76.454

100

0.775
  comQ Acinetobacter baylyi ADP1

74.51

100

0.747
  pilQ Pseudomonas aeruginosa PAK

40.514

98.455

0.399
  pilQ Legionella pneumophila strain ERS1305867

38.472

99.298

0.382
  pilQ Legionella pneumophila strain Lp02

38.472

99.298

0.382

Multiple sequence alignment