Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   GA721_RS01285 Genome accession   NZ_CP045131
Coordinates   278386..278913 (+) Length   175 a.a.
NCBI ID   WP_104489345.1    Uniprot ID   -
Organism   Acinetobacter indicus strain TQ18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 273386..283913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA721_RS01270 pilM 275977..277035 (+) 1059 WP_075174946.1 pilus assembly protein PilM Machinery gene
  GA721_RS01275 pilN 277035..277670 (+) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  GA721_RS01280 pilO 277667..278386 (+) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  GA721_RS01285 pilP 278386..278913 (+) 528 WP_104489345.1 pilus assembly protein PilP Machinery gene
  GA721_RS01290 pilQ 278974..281112 (+) 2139 WP_168394005.1 type IV pilus secretin PilQ family protein Machinery gene
  GA721_RS01295 aroK 281149..281691 (+) 543 WP_104487954.1 shikimate kinase AroK -
  GA721_RS01300 aroB 281714..282796 (+) 1083 WP_160242747.1 3-dehydroquinate synthase -
  GA721_RS01305 - 282809..283645 (+) 837 WP_160242748.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19272.46 Da        Isoelectric Point: 7.1666

>NTDB_id=392160 GA721_RS01285 WP_104489345.1 278386..278913(+) (pilP) [Acinetobacter indicus strain TQ18]
MKFEKLSLVLVLGLLAAGCDSRIDAVNTQMAEIRNQPPLPIEPAPTFEPAPVFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNLSRQLQPLESYALETLSMKGSMRGQRGEILALIQTPDGEIERIQRGSYMGLNHGRVINITPTQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=392160 GA721_RS01285 WP_104489345.1 278386..278913(+) (pilP) [Acinetobacter indicus strain TQ18]
ATGAAATTTGAAAAACTTTCGTTGGTTCTGGTGTTGGGCCTACTGGCTGCAGGCTGTGATTCACGTATTGATGCCGTGAA
TACACAAATGGCAGAAATCCGTAATCAGCCGCCGTTGCCGATTGAGCCGGCACCGACTTTTGAGCCGGCACCTGTATTTA
ACTATGCAGCGCATCAGCTGAAAAGCCCGTTTATGCCAAGTTCTCTGGCGGCCGAGCTGAAAATTATGGCGGGTAAACGG
GTTTATCCAAACCTGTCGCGCCAGTTGCAGCCTTTAGAAAGCTATGCACTGGAAACTTTAAGTATGAAAGGTAGCATGCG
CGGGCAACGCGGCGAGATTCTGGCCCTGATTCAAACTCCAGATGGGGAAATTGAACGGATTCAGCGCGGCAGCTATATGG
GCTTGAATCATGGTCGGGTCATCAATATCACACCGACACAAATTGACTTAATTGAGATTATTCCAGATGGTCGCGAAGGG
TATGTTGAACGTCCAAGAAGTCTAGTACTGATTGGGCCGGCGCCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(28-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

75.429

100

0.754
  comL Acinetobacter baylyi ADP1

71.856

95.429

0.686

Multiple sequence alignment