Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   GA660_RS09880 Genome accession   NZ_CP045129
Coordinates   2087940..2090342 (-) Length   800 a.a.
NCBI ID   WP_171502413.1    Uniprot ID   -
Organism   Acinetobacter indicus strain TQ04     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2082940..2095342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA660_RS09855 purM 2083263..2084333 (+) 1071 WP_005176576.1 phosphoribosylformylglycinamidine cyclo-ligase -
  GA660_RS09860 purN 2084340..2084969 (+) 630 WP_104500385.1 phosphoribosylglycinamide formyltransferase -
  GA660_RS09865 - 2085046..2085849 (-) 804 WP_160241494.1 alpha/beta fold hydrolase -
  GA660_RS09870 sppA 2085846..2086871 (-) 1026 WP_016660002.1 signal peptide peptidase SppA -
  GA660_RS09875 - 2087002..2087943 (+) 942 WP_160241495.1 lysophospholipid acyltransferase family protein -
  GA660_RS09880 comA/comEC 2087940..2090342 (-) 2403 WP_171502413.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GA660_RS09885 lolD 2090428..2091111 (-) 684 WP_005176563.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  GA660_RS09890 - 2091104..2092339 (-) 1236 WP_160241497.1 lipoprotein-releasing ABC transporter permease subunit -
  GA660_RS09895 - 2092365..2092931 (+) 567 WP_160241498.1 PilZ domain-containing protein -
  GA660_RS09900 - 2092919..2093842 (-) 924 WP_160241499.1 DMT family transporter -
  GA660_RS09905 - 2093848..2094315 (-) 468 WP_005176559.1 YaiI/YqxD family protein -

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 91542.60 Da        Isoelectric Point: 7.5114

>NTDB_id=392138 GA660_RS09880 WP_171502413.1 2087940..2090342(-) (comA/comEC) [Acinetobacter indicus strain TQ04]
MFKIMGAGWIVGIACMGTTLWPMLDFPLWLSGLLLIILLLQQIAALHWSHLGIQLINTCVAFVITFLLGLNFAQNQLQER
LIFRELTRQPAEVVVYVQQINQLGSSQLRQPVQVLNRHSQPVQWLALLPAEQELQLGRYYRLQGQTLPAHSFAVPGAFDV
EQWYLQQNIMSGFQVQSIVELTESELYRLGFGGYLRQQQQLWPQFKLWIETQRLQIRDFIQQQALRHPGLMLALLTGDKS
LLDEATEQQFQRFGMSHLLAISGPHVLIFAAMLCFVLQRLVTRYWPELYARLPRSYLLLLPFMGCVFVYCAYVGFEIPAL
RTLLICLVAGACLLLKQPIQPLSLLIGSASLLLLLDPLSVLSAAFWLSYGACFVLLRIYQTLRQQPVHPQQTLMQKLWQG
FRLLFESQWKIFIALFPLMIIFFKQIAWIAPLSNLLAIPWIGLVTVPLDILAGLSFYLAEPLSQLLFQLNDLALSLLLGC
LQLLDLLFVPQLIPVALSPPMLLSLVLGLMILFLPAGLVPKAWSALCLLPLLFQDQFSRQVELTVLDVGQGQAIFLRYRE
HSMMIDMGGHYDEQKWSIGRQIIQPFLSVKGVQQLDYLWLTHLDQDHSGAYQTLKPQLQVQQVYANAQLEVNPHSHFDYC
QQGQQWQWQPGIQIQILSPKPEQLNPVEQQKNESSCVLLVEFAQAQPYSRFLLMGDAGWPTEYQLLQDYPDLKVDVLVLG
HHGSRHSSSYQFLKQLEPKLAIASAGLNNRYGHPSTQVQARLNALKIPLWQTAQQGSIQFYPTENEVLPYRHMRVWLRRD

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=392138 GA660_RS09880 WP_171502413.1 2087940..2090342(-) (comA/comEC) [Acinetobacter indicus strain TQ04]
ATGTTCAAAATCATGGGTGCCGGCTGGATTGTAGGTATTGCCTGTATGGGCACAACGCTATGGCCGATGCTGGATTTCCC
GCTCTGGTTGTCAGGCCTGTTACTGATTATCCTGCTTTTACAGCAAATAGCTGCTTTACATTGGTCCCATCTGGGCATCC
AATTGATTAATACCTGTGTGGCATTTGTCATTACATTTTTGTTGGGGCTGAATTTTGCCCAAAACCAGTTGCAAGAGCGG
TTGATATTTCGTGAACTGACCCGCCAGCCGGCAGAGGTGGTGGTCTATGTCCAGCAAATCAATCAGCTGGGTAGCAGCCA
GCTCCGGCAACCGGTTCAGGTGCTGAACCGGCATAGCCAGCCGGTGCAATGGCTGGCCTTGCTGCCGGCTGAACAGGAAC
TACAGCTGGGGCGTTATTATCGTTTACAGGGGCAGACCTTGCCGGCGCACAGTTTTGCCGTTCCGGGTGCGTTTGATGTA
GAGCAGTGGTATCTCCAGCAAAATATCATGAGCGGCTTTCAGGTCCAGTCGATTGTGGAACTGACTGAATCGGAACTGTA
TCGGCTGGGATTTGGGGGCTATTTAAGACAGCAGCAGCAACTCTGGCCGCAGTTTAAATTGTGGATCGAAACGCAGCGTT
TACAGATTCGTGACTTTATCCAGCAGCAGGCATTGCGGCATCCCGGTTTAATGCTGGCACTGCTGACTGGCGATAAAAGT
TTACTCGATGAAGCCACCGAGCAGCAGTTTCAGCGTTTCGGGATGAGTCATTTGCTGGCGATTTCCGGGCCGCATGTGCT
GATTTTTGCCGCCATGCTGTGTTTTGTGCTGCAGCGCCTGGTCACTCGCTATTGGCCCGAATTATATGCGCGATTGCCCC
GAAGTTATCTGCTGTTGCTGCCGTTTATGGGCTGTGTATTTGTATATTGTGCCTATGTTGGGTTTGAAATTCCTGCGCTC
AGAACTTTACTGATTTGTCTGGTGGCAGGCGCCTGCCTGTTGCTAAAGCAGCCGATACAGCCGCTGTCTTTGCTGATTGG
TAGTGCTTCGTTATTGCTGCTGCTTGATCCGTTGAGTGTGCTGTCGGCGGCATTCTGGCTGTCTTATGGCGCCTGCTTTG
TGCTGTTAAGGATTTACCAGACCCTCCGGCAACAACCGGTGCATCCGCAGCAGACGTTGATGCAGAAATTGTGGCAGGGC
TTCCGGCTGTTATTTGAATCGCAATGGAAAATTTTTATTGCGCTGTTTCCGCTGATGATCATCTTCTTCAAGCAGATTGC
CTGGATTGCGCCGCTGAGTAATCTATTGGCCATTCCCTGGATCGGTCTGGTGACTGTACCGCTGGATATTCTGGCCGGTT
TAAGTTTTTATCTGGCGGAACCGCTGAGCCAGTTGCTGTTTCAGCTCAATGACTTGGCGCTAAGTCTGTTATTGGGTTGT
TTGCAGTTGCTGGATTTGCTGTTTGTGCCGCAACTGATTCCGGTTGCGCTGAGCCCACCGATGCTGCTGAGTCTGGTGCT
GGGACTGATGATTTTATTTCTTCCCGCAGGTCTAGTGCCTAAAGCCTGGTCAGCGCTGTGCTTGTTGCCTTTGCTGTTTC
AGGATCAGTTTTCTCGGCAGGTGGAACTTACTGTGCTGGATGTTGGGCAGGGGCAGGCAATCTTTTTACGCTATCGTGAA
CACAGCATGATGATTGATATGGGCGGTCATTATGATGAACAGAAATGGAGTATCGGCCGGCAGATTATCCAGCCCTTTTT
AAGTGTCAAAGGCGTGCAGCAGTTAGATTATTTATGGTTGACCCATCTGGATCAGGATCATAGCGGCGCTTATCAGACCT
TAAAGCCACAGTTACAGGTGCAACAGGTCTATGCCAATGCTCAGCTTGAAGTAAATCCTCATAGCCATTTTGACTATTGC
CAGCAAGGACAGCAATGGCAGTGGCAGCCGGGCATCCAGATACAGATACTCTCTCCGAAACCGGAGCAGTTAAATCCTGT
AGAACAGCAGAAAAATGAAAGTTCCTGTGTGCTGCTGGTCGAGTTTGCACAGGCTCAGCCTTATTCTCGCTTTTTATTGA
TGGGTGATGCAGGCTGGCCGACTGAATATCAGTTATTACAGGATTATCCGGATTTAAAAGTGGATGTGCTGGTGCTTGGC
CATCATGGTAGCCGGCACAGTTCATCTTACCAGTTTTTAAAACAGCTGGAGCCTAAACTGGCAATTGCATCGGCGGGGCT
AAATAACCGTTATGGGCATCCGAGCACACAGGTACAAGCCCGACTGAACGCCTTAAAAATTCCATTATGGCAGACCGCGC
AGCAGGGTAGCATCCAGTTTTATCCCACTGAGAATGAGGTGCTACCGTATCGGCATATGCGGGTTTGGCTGCGGCGTGAT
TAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(234-515)

Domain of unknown function (DUF4131) (DUF4131)

(25-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Acinetobacter baylyi ADP1

48.089

100

0.488
  comA/comEC Acinetobacter baumannii D1279779

47.794

100

0.487
  comA/comEC Acinetobacter baumannii strain A118

47.304

100

0.483

Multiple sequence alignment