Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   GA660_RS01805 Genome accession   NZ_CP045129
Coordinates   379741..383610 (+) Length   1289 a.a.
NCBI ID   WP_160240918.1    Uniprot ID   -
Organism   Acinetobacter indicus strain TQ04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 366476..390945 379741..383610 within 0


Gene organization within MGE regions


Location: 366476..390945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA660_RS01735 - 366476..367456 (+) 981 WP_160240911.1 acyltransferase family protein -
  GA660_RS01740 - 367550..368752 (+) 1203 WP_160240912.1 serine hydrolase domain-containing protein -
  GA660_RS01745 - 369104..370744 (+) 1641 WP_160240913.1 O-antigen ligase family protein -
  GA660_RS01750 bfr 370853..371317 (-) 465 WP_005180468.1 bacterioferritin -
  GA660_RS01755 - 371544..371738 (-) 195 WP_034597991.1 bacterioferritin-associated ferredoxin -
  GA660_RS01760 - 371893..372276 (-) 384 WP_104513240.1 RidA family protein -
  GA660_RS01765 - 372348..374447 (-) 2100 WP_160240914.1 RelA/SpoT family protein -
  GA660_RS01770 rpoZ 374670..374951 (-) 282 WP_005013174.1 DNA-directed RNA polymerase subunit omega -
  GA660_RS01775 gmk 375028..375651 (-) 624 WP_045795273.1 guanylate kinase -
  GA660_RS01780 ispH 375787..376737 (+) 951 WP_045795274.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  GA660_RS01785 - 376901..377452 (+) 552 WP_160240915.1 Tfp pilus assembly protein FimT/FimU -
  GA660_RS01790 pilV 377449..377964 (+) 516 WP_104472464.1 type IV pilus modification protein PilV Machinery gene
  GA660_RS01795 - 377964..378926 (+) 963 WP_160240916.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GA660_RS01800 - 378919..379725 (+) 807 WP_160240917.1 PilX N-terminal domain-containing pilus assembly protein -
  GA660_RS01805 pilY1 379741..383610 (+) 3870 WP_160240918.1 PilC/PilY family type IV pilus protein Machinery gene
  GA660_RS01810 - 383615..384142 (+) 528 WP_160240919.1 type IV pilin protein -
  GA660_RS01815 - 384136..384588 (+) 453 WP_104472458.1 type IV pilin protein -
  GA660_RS01820 rpsP 384727..384984 (+) 258 WP_004809941.1 30S ribosomal protein S16 -
  GA660_RS01825 rimM 385013..385561 (+) 549 WP_016658481.1 ribosome maturation factor RimM -
  GA660_RS01830 trmD 385588..386337 (+) 750 WP_104500704.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  GA660_RS01835 rplS 386511..386885 (+) 375 WP_003792460.1 50S ribosomal protein L19 -
  GA660_RS01840 - 386948..387924 (-) 977 Protein_356 esterase/lipase family protein -
  GA660_RS01845 - 387988..388959 (-) 972 WP_160240920.1 esterase/lipase family protein -
  GA660_RS01850 - 389078..390210 (+) 1133 WP_223155595.1 IS3-like element ISAba14 family transposase -
  GA660_RS01855 - 390337..390945 (-) 609 WP_228718912.1 hypothetical protein -

Sequence

Protein


Download         Length: 1289 a.a.        Molecular weight: 139638.02 Da        Isoelectric Point: 5.4096

>NTDB_id=392121 GA660_RS01805 WP_160240918.1 379741..383610(+) (pilY1) [Acinetobacter indicus strain TQ04]
MQLRKIQISVLSAALTALMCSSVVQASDLQIYAMPTAGQKTIVMMVDVSGSMAWTMGGSTTNNDSLKRITQLKNGIRAVL
DSDDPKLENVVMGLGKFPRASGSKQGVILVPAAKLGAPARNGQPESAQRQALRWAVNNQLAAVGGTPTSHGYAEAASYLM
GTRTNSYIEEQQADVYRENLQRTGNSSNRKYNECTSYSSNISRIGSYYYQECLNFSPITATAFEGKSYDFYTDQSNPRSY
FIKTNIKTLIKVEKNQSNTSGFSNSVLDSKTTTNEIEHYKSPLPTNKVSCDGQGVYVLSDGEPNDSSDAAAQTQMINALS
SPVLNPPDTNFSCNVSSSNLTNPLTGGNSGGAWKCMGEFAKRLYSGANPAGVKIQTAFVGYSNSFNNLSNDDVRNACKLG
SNLKGDACSYYQADGLTLNLNATRRNPESGYGNGGFYTATSANDVTKSVLNFIDNLGTDPLSPLPTGALSVPIDALNPNG
LQNVGYLRMLEPNPAQPSLLTWAGNLKKYTMKDGVLVDRNINIFDAIGNFATNTKNLWGSLLQNDGGLIQVGGTYEMLPM
PTETKQSTLRNLVTDVKDVNGNILVPLETRDETTGTVTPTPLLRVPNLDTGISKNTVLNQFRSQSVLSQFPVSVRLKLLN
YLGFKVDTALEELPENDEVSYEGSPYISMGGIIHSFPVQMTYSGVISSSGELLTQDIPLDDGNFVRARQQSVLYGSMEGG
LHIVDSLTGEEQMVFVPAEILNDERASSALVQKGSGTPAPAHGVDAPWVVDATYRTSGTHPNAQVVATKMNVYGGLRMGG
NSFYALDVLNPKKPKLKFRIGPDLSDFSRMGQSWSKPTLINLRINGKPKRAMVVGGGYDMCYENPRFKLASAATENDTDN
CSTKTRAKGNAIYVVDADTGERLFWASNNDSDADNTHMKHSIVSRVSALDRDGDGFEDHLYFGDLGGQIFRIDLDNYHEK
AGESFGVRTTRLANLATNTDGTSITNGDNPRFYEPVTLTIHDEQGSTSSKTFIVVGAASGDRSTPLDVAPTEGRDGLSPN
IALSGRPVNKVYGIFDLDFINDSLITNRELTTDYTATTSEEDVPLSNRLLTRELTLKDLLSNPQVALTETNTAYSQYFNE
TAPKFGWYRSLSWSWDTTANGAELANGTFRKPGGLKAFEEPLAIGNNLFIPVYDPEGTGITPQDPCLPRVVGETDRQQYC
LPFGVCVTDTGAIDIMREKKTGFRVERDGAGWKNANVIGKGIQGIALANNGGTTGNNSCGNFTLASNTSGIGNWQCTRKL
NPTRWFEKR

Nucleotide


Download         Length: 3870 bp        

>NTDB_id=392121 GA660_RS01805 WP_160240918.1 379741..383610(+) (pilY1) [Acinetobacter indicus strain TQ04]
ATGCAACTCAGAAAAATTCAAATATCTGTATTGAGTGCAGCATTGACCGCACTTATGTGTAGTTCAGTTGTACAGGCAAG
CGATTTACAGATTTATGCGATGCCAACAGCAGGTCAAAAAACGATTGTAATGATGGTGGATGTTTCAGGGAGCATGGCCT
GGACCATGGGTGGTAGCACGACTAATAACGATAGTTTAAAGCGTATTACACAATTAAAAAATGGGATCCGTGCAGTATTG
GATAGTGATGATCCAAAACTTGAAAATGTGGTGATGGGTTTAGGTAAGTTTCCTAGAGCAAGCGGTAGTAAGCAGGGAGT
TATTCTTGTTCCTGCTGCAAAACTTGGTGCGCCTGCACGAAATGGACAGCCTGAATCTGCACAGCGCCAAGCTCTTCGTT
GGGCTGTTAATAACCAGCTTGCAGCGGTAGGTGGTACACCAACTTCTCATGGTTATGCAGAAGCTGCATCATATTTAATG
GGGACTAGAACAAATTCTTATATAGAGGAGCAGCAAGCGGATGTGTATAGAGAAAATTTACAACGAACTGGTAATTCATC
TAATAGAAAATATAATGAATGTACTTCTTATAGCTCTAATATAAGTAGAATTGGTTCGTACTATTATCAAGAGTGTTTAA
ATTTTTCGCCAATAACTGCAACAGCATTCGAAGGTAAGAGCTATGATTTTTATACTGACCAAAGTAATCCACGTTCCTAC
TTCATTAAAACAAATATCAAGACACTTATAAAAGTAGAAAAAAATCAGAGTAATACAAGTGGTTTTTCTAACTCAGTTTT
AGATAGCAAAACTACAACTAATGAAATAGAACACTACAAGTCTCCTTTACCAACGAATAAAGTTTCTTGTGATGGTCAAG
GTGTATATGTTTTATCGGATGGGGAACCTAATGACTCTTCTGATGCTGCGGCTCAAACTCAAATGATAAATGCTTTGTCA
TCTCCAGTTCTTAATCCGCCGGATACAAACTTTTCTTGTAATGTGAGTTCTTCAAATTTGACAAATCCATTAACTGGTGG
AAATAGTGGTGGTGCTTGGAAATGTATGGGAGAGTTTGCTAAGCGCTTATATTCAGGAGCTAATCCAGCTGGTGTTAAAA
TTCAAACAGCATTTGTTGGTTATAGTAACAGCTTTAACAATCTCTCTAATGATGATGTAAGAAATGCATGTAAGTTGGGC
TCTAATTTAAAAGGTGATGCTTGTTCATACTATCAAGCCGATGGCTTAACACTCAATCTTAATGCAACTCGGCGTAATCC
TGAAAGTGGTTACGGAAATGGTGGATTTTATACAGCAACTTCGGCAAATGATGTTACCAAAAGTGTATTAAACTTTATTG
ATAATTTGGGAACGGATCCTCTATCTCCTCTACCGACAGGTGCTTTGTCTGTTCCGATTGATGCCTTAAATCCAAATGGA
TTACAAAATGTAGGTTACTTGCGTATGTTAGAGCCTAATCCGGCTCAACCTAGCTTGTTAACTTGGGCGGGAAATCTCAA
GAAATATACAATGAAAGATGGCGTCTTGGTCGATCGTAATATTAATATCTTTGATGCAATTGGTAATTTCGCAACCAATA
CTAAAAATTTGTGGGGTTCATTATTACAGAATGATGGTGGTTTGATTCAAGTTGGTGGGACATATGAAATGTTGCCTATG
CCAACTGAAACTAAGCAATCGACATTACGTAACTTGGTCACAGATGTAAAAGATGTAAATGGTAATATCTTGGTTCCATT
AGAAACTCGAGATGAGACTACAGGAACAGTGACACCTACTCCATTACTTCGAGTGCCGAATTTGGATACAGGAATTTCTA
AAAATACTGTTTTAAATCAATTTAGAAGTCAAAGTGTGCTCTCACAATTTCCAGTATCTGTGCGACTTAAGTTACTTAAC
TATTTAGGATTTAAAGTAGATACAGCGTTAGAAGAATTACCTGAAAATGATGAGGTGAGTTATGAAGGATCTCCATATAT
CAGTATGGGCGGCATTATTCACTCTTTCCCTGTTCAAATGACATATTCAGGCGTGATTTCTAGTTCTGGTGAACTATTAA
CTCAAGATATTCCATTGGATGATGGGAATTTTGTGCGAGCACGTCAGCAATCGGTTTTATATGGATCAATGGAGGGAGGA
TTGCATATCGTTGATTCTCTTACTGGTGAAGAGCAAATGGTATTTGTTCCTGCTGAAATTTTAAATGATGAAAGAGCTTC
TAGTGCTTTAGTTCAAAAAGGATCTGGTACTCCAGCACCAGCACATGGTGTAGATGCACCTTGGGTGGTTGATGCAACTT
ATCGTACTTCAGGAACTCATCCAAATGCGCAAGTTGTGGCGACAAAAATGAACGTATATGGTGGTTTAAGGATGGGAGGG
AACAGTTTCTATGCTCTGGATGTTCTTAATCCTAAAAAACCAAAGTTGAAATTTAGAATTGGTCCAGACTTAAGTGATTT
TAGTCGTATGGGGCAATCTTGGTCCAAACCTACATTAATTAATCTTCGTATAAATGGAAAGCCTAAAAGAGCCATGGTTG
TGGGTGGTGGTTATGATATGTGTTACGAAAATCCAAGATTTAAACTAGCTTCAGCTGCAACTGAAAATGATACAGATAAC
TGTTCTACTAAGACTAGGGCTAAAGGTAACGCGATTTACGTGGTAGATGCCGATACAGGAGAACGCCTATTCTGGGCAAG
TAATAATGATTCAGATGCAGATAATACTCATATGAAGCATAGTATTGTCTCACGTGTCAGTGCTTTGGATCGCGATGGTG
ATGGTTTTGAAGATCATCTGTATTTTGGTGATTTGGGTGGGCAAATTTTTAGGATTGATCTAGATAATTATCATGAAAAA
GCAGGTGAATCTTTTGGTGTACGCACAACAAGACTTGCTAATTTGGCAACAAATACAGATGGAACATCAATTACCAATGG
TGATAACCCACGTTTTTATGAACCAGTGACCTTAACAATTCATGATGAACAAGGTTCTACATCAAGTAAGACATTTATTG
TAGTAGGTGCAGCATCAGGTGATCGTAGTACCCCATTAGATGTTGCTCCAACAGAGGGGCGAGATGGATTGTCACCGAAT
ATTGCACTAAGCGGGCGTCCAGTAAATAAAGTTTACGGAATTTTTGACTTAGATTTTATTAATGACAGCCTGATTACTAA
TAGAGAGTTAACTACTGATTACACTGCAACTACAAGTGAAGAGGATGTACCTTTATCGAACCGTTTGCTTACCCGTGAAT
TAACCCTTAAAGACTTATTATCCAATCCACAGGTAGCATTAACAGAAACCAACACCGCATATAGTCAATATTTTAATGAG
ACTGCACCAAAATTTGGCTGGTACCGTTCGCTTTCTTGGAGTTGGGATACTACAGCTAATGGTGCTGAATTAGCCAATGG
AACATTTAGAAAGCCAGGTGGTCTTAAAGCATTTGAAGAGCCTTTAGCGATTGGAAATAATTTGTTTATTCCAGTTTATG
ATCCTGAAGGTACTGGTATTACACCACAAGACCCATGTTTGCCAAGGGTTGTCGGTGAGACAGATCGACAACAATATTGT
TTACCATTTGGAGTATGTGTCACAGATACAGGCGCTATTGATATAATGCGTGAAAAGAAAACAGGGTTTCGTGTTGAGCG
TGACGGTGCAGGTTGGAAAAATGCAAATGTCATTGGCAAGGGGATTCAAGGTATTGCATTAGCAAACAATGGTGGTACAA
CAGGAAATAATAGTTGTGGAAACTTTACTCTTGCGAGCAATACGAGTGGCATTGGTAATTGGCAATGTACACGTAAATTG
AATCCGACTCGTTGGTTTGAAAAGAGGTAG

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(706-954)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

47.015

100

0.489

Multiple sequence alignment