Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   GA660_RS01790 Genome accession   NZ_CP045129
Coordinates   377449..377964 (+) Length   171 a.a.
NCBI ID   WP_104472464.1    Uniprot ID   -
Organism   Acinetobacter indicus strain TQ04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 366476..390945 377449..377964 within 0


Gene organization within MGE regions


Location: 366476..390945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA660_RS01735 - 366476..367456 (+) 981 WP_160240911.1 acyltransferase family protein -
  GA660_RS01740 - 367550..368752 (+) 1203 WP_160240912.1 serine hydrolase domain-containing protein -
  GA660_RS01745 - 369104..370744 (+) 1641 WP_160240913.1 O-antigen ligase family protein -
  GA660_RS01750 bfr 370853..371317 (-) 465 WP_005180468.1 bacterioferritin -
  GA660_RS01755 - 371544..371738 (-) 195 WP_034597991.1 bacterioferritin-associated ferredoxin -
  GA660_RS01760 - 371893..372276 (-) 384 WP_104513240.1 RidA family protein -
  GA660_RS01765 - 372348..374447 (-) 2100 WP_160240914.1 RelA/SpoT family protein -
  GA660_RS01770 rpoZ 374670..374951 (-) 282 WP_005013174.1 DNA-directed RNA polymerase subunit omega -
  GA660_RS01775 gmk 375028..375651 (-) 624 WP_045795273.1 guanylate kinase -
  GA660_RS01780 ispH 375787..376737 (+) 951 WP_045795274.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  GA660_RS01785 - 376901..377452 (+) 552 WP_160240915.1 Tfp pilus assembly protein FimT/FimU -
  GA660_RS01790 pilV 377449..377964 (+) 516 WP_104472464.1 type IV pilus modification protein PilV Machinery gene
  GA660_RS01795 - 377964..378926 (+) 963 WP_160240916.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GA660_RS01800 - 378919..379725 (+) 807 WP_160240917.1 PilX N-terminal domain-containing pilus assembly protein -
  GA660_RS01805 pilY1 379741..383610 (+) 3870 WP_160240918.1 PilC/PilY family type IV pilus protein Machinery gene
  GA660_RS01810 - 383615..384142 (+) 528 WP_160240919.1 type IV pilin protein -
  GA660_RS01815 - 384136..384588 (+) 453 WP_104472458.1 type IV pilin protein -
  GA660_RS01820 rpsP 384727..384984 (+) 258 WP_004809941.1 30S ribosomal protein S16 -
  GA660_RS01825 rimM 385013..385561 (+) 549 WP_016658481.1 ribosome maturation factor RimM -
  GA660_RS01830 trmD 385588..386337 (+) 750 WP_104500704.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  GA660_RS01835 rplS 386511..386885 (+) 375 WP_003792460.1 50S ribosomal protein L19 -
  GA660_RS01840 - 386948..387924 (-) 977 Protein_356 esterase/lipase family protein -
  GA660_RS01845 - 387988..388959 (-) 972 WP_160240920.1 esterase/lipase family protein -
  GA660_RS01850 - 389078..390210 (+) 1133 WP_223155595.1 IS3-like element ISAba14 family transposase -
  GA660_RS01855 - 390337..390945 (-) 609 WP_228718912.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18099.74 Da        Isoelectric Point: 6.4305

>NTDB_id=392120 GA660_RS01790 WP_104472464.1 377449..377964(+) (pilV) [Acinetobacter indicus strain TQ04]
MNTAYQRGVGLMEVLVALLLLAIGVLGYTALQVRAVEASTEATQRSHALFVLKGLAESIRANNTGRTAYQNLVNTAQESV
HAKACINSNNLCTAENLARADVAQAQANAGNFGMQLRMEVCPGVANVTGEETRMCLYAAWGATNITANTTACMNATGVYV
VGSSCLMMELY

Nucleotide


Download         Length: 516 bp        

>NTDB_id=392120 GA660_RS01790 WP_104472464.1 377449..377964(+) (pilV) [Acinetobacter indicus strain TQ04]
ATGAATACAGCTTATCAACGTGGTGTTGGGCTAATGGAAGTCTTGGTAGCCCTTCTCCTCTTAGCAATAGGTGTGTTGGG
TTATACCGCATTGCAAGTACGTGCGGTTGAGGCGAGTACGGAAGCAACCCAAAGGTCTCATGCTTTATTTGTACTTAAAG
GGTTGGCTGAGAGCATTCGTGCAAATAATACAGGAAGGACAGCCTATCAAAATTTAGTAAATACAGCTCAGGAATCGGTG
CATGCGAAAGCATGTATTAATTCTAATAACTTATGTACGGCAGAAAATCTCGCTCGAGCAGATGTGGCTCAAGCGCAAGC
TAATGCTGGAAACTTTGGGATGCAGTTACGCATGGAGGTATGTCCAGGCGTAGCCAATGTGACGGGTGAAGAGACACGTA
TGTGTCTGTATGCAGCTTGGGGAGCAACAAATATAACGGCGAATACAACAGCATGTATGAATGCAACAGGTGTCTATGTG
GTTGGATCAAGCTGTTTGATGATGGAGCTATACTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

48.045

100

0.503
  pilV Acinetobacter baylyi ADP1

40.462

100

0.409

Multiple sequence alignment