Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   GA645_RS19150 Genome accession   NZ_CP045118
Coordinates   4194093..4196303 (-) Length   736 a.a.
NCBI ID   WP_152228205.1    Uniprot ID   -
Organism   Pseudomonas sp. SCB32     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4189093..4201303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA645_RS19115 murB 4189458..4190477 (-) 1020 WP_152224547.1 UDP-N-acetylmuramate dehydrogenase -
  GA645_RS19120 - 4190474..4190938 (-) 465 WP_152224548.1 low molecular weight protein-tyrosine-phosphatase -
  GA645_RS19125 kdsB 4190938..4191702 (-) 765 WP_152224549.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GA645_RS19130 - 4191707..4191892 (-) 186 WP_081519465.1 Trm112 family protein -
  GA645_RS19135 lpxK 4191945..4192943 (-) 999 WP_152224550.1 tetraacyldisaccharide 4'-kinase -
  GA645_RS19140 - 4192943..4193389 (-) 447 WP_152224551.1 biopolymer transporter ExbD -
  GA645_RS19145 exbB 4193386..4194021 (-) 636 WP_152224552.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GA645_RS19150 comA 4194093..4196303 (-) 2211 WP_152228205.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GA645_RS19155 - 4196468..4196998 (+) 531 WP_152224553.1 DUF2062 domain-containing protein -
  GA645_RS19160 - 4197171..4198418 (-) 1248 WP_152224554.1 lipoprotein-releasing ABC transporter permease subunit -
  GA645_RS19165 lolD 4198430..4199128 (-) 699 WP_152224555.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  GA645_RS19170 - 4199121..4200374 (-) 1254 WP_152224556.1 lipoprotein-releasing ABC transporter permease subunit -
  GA645_RS19175 - 4200499..4201074 (+) 576 WP_152224557.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 79680.13 Da        Isoelectric Point: 7.9955

>NTDB_id=392039 GA645_RS19150 WP_152228205.1 4194093..4196303(-) (comA) [Pseudomonas sp. SCB32]
MFALAVGLLAVRWLSAIPGGWVLLLLAVLALPLLFTRGYFIGLFLLGFAWACQSALWALDDRLARDLDGRTLWLEGRVEG
LPDRSGASVRFMLSEVSSPRAQVPGTLRLSWFDGPPVEGGERWRLAVKLKRPHGMVNGAGFDYEAWLTAQRIGATGSVKD
GQRLETASGPPAWREAWRQRLLAVDANGRSGALAALVLGDASGLTTADWQVLQDTGTLHLMVISGSHISLLAGLLYALVA
GLARWGVWPARLPWLPCACLLAATGAWAYSLMAGFDVPLQRACIMVSIVLLWRLRYRQSGLWTPLLGALLAVLMAEPLVV
LLPGFWLSYAAVALLIFGFSGRLGRWTAWRTWLRAQWLMAIGLLPASIALGLPLSISGVVANLIAVPWVEMVVVPLALLG
CLALGIPWLGEALLWVSGGLLELLFRLLTWMAGLAPAWQPLAAPAWALLLAMLGALLLLAPAGVPLRALGLAMFLPVFWP
SVELPPPGQAEVRVLDVGQGLSVLIRTRSQAWLYDTGARNGDFDIGERVVVPTLRSLGIDHLDLLMLSHADNDHAGGAQA
VKNSLRPPQVISGEPERLSPRLQARPCRKEHWVIDGVNFSSWAWDGAKESNDRSCVLALEAGGERLLLTGDLPQAGERAW
LAEHPDVHVDWLLAGHHGSRSSSGPAFVRALGPSVAIFSRGANNPYGHPHPSVVERFRELGIRLHDTAEEGALILMLGAH
GELRGVREGAHFWQEK

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=392039 GA645_RS19150 WP_152228205.1 4194093..4196303(-) (comA) [Pseudomonas sp. SCB32]
ATGTTCGCGCTGGCCGTCGGGCTGCTGGCGGTGCGCTGGTTATCGGCCATTCCAGGCGGATGGGTGCTGTTGCTGCTGGC
TGTGCTGGCGTTGCCCCTGCTGTTCACCCGTGGCTATTTCATCGGCCTGTTCCTGCTCGGGTTCGCCTGGGCTTGCCAGT
CGGCGCTGTGGGCGCTGGATGACCGGCTGGCCAGGGACCTCGACGGGCGCACGCTATGGCTGGAGGGCCGGGTAGAGGGG
CTGCCGGATCGCTCCGGGGCTTCGGTGCGCTTCATGCTTTCCGAAGTTTCCAGCCCGCGTGCTCAGGTGCCTGGAACGTT
GCGCCTCTCCTGGTTCGATGGCCCGCCGGTTGAGGGCGGGGAGCGCTGGCGTCTGGCGGTTAAGCTCAAACGCCCCCATG
GCATGGTCAATGGCGCCGGGTTCGATTACGAGGCCTGGCTCACCGCGCAGCGTATCGGTGCTACCGGCAGCGTAAAGGAT
GGGCAGCGACTGGAGACGGCCAGCGGCCCACCCGCTTGGCGCGAAGCCTGGCGGCAGCGCTTGCTGGCGGTCGATGCAAA
CGGCCGCTCCGGCGCGTTGGCGGCGCTGGTGCTGGGTGACGCCTCCGGCCTGACCACGGCGGACTGGCAGGTGCTGCAGG
ACACCGGAACCCTGCACCTGATGGTGATCTCCGGTTCGCATATCTCGCTGCTGGCCGGGTTGCTCTATGCCCTGGTCGCC
GGGCTGGCGCGCTGGGGCGTCTGGCCCGCGCGCCTGCCCTGGCTGCCCTGTGCCTGCCTGCTCGCCGCAACCGGCGCCTG
GGCCTACAGCCTGATGGCGGGGTTCGATGTGCCGCTGCAGCGCGCCTGCATCATGGTCTCGATCGTCCTCCTGTGGCGCC
TGCGTTACCGCCAGAGCGGCCTGTGGACGCCATTGCTCGGCGCCTTGCTGGCGGTGCTCATGGCCGAGCCGCTGGTCGTA
CTGCTGCCCGGCTTCTGGCTGTCCTACGCGGCTGTGGCGCTGCTGATCTTCGGTTTTTCCGGCCGGCTGGGGCGCTGGAC
AGCCTGGCGCACCTGGCTGCGCGCGCAATGGCTGATGGCGATCGGCTTGCTGCCGGCGTCCATTGCCCTCGGCCTACCAC
TGAGCATTTCCGGGGTGGTCGCGAACCTGATCGCCGTGCCCTGGGTGGAAATGGTGGTCGTGCCACTCGCCCTGCTGGGC
TGTCTGGCATTGGGTATTCCCTGGCTGGGCGAGGCGCTGCTCTGGGTATCCGGCGGGCTGCTGGAGCTGCTGTTCCGCCT
GCTGACCTGGATGGCCGGGCTCGCGCCGGCCTGGCAGCCGTTGGCGGCGCCTGCCTGGGCATTGCTGCTGGCGATGCTAG
GGGCGTTGTTATTGCTGGCGCCAGCGGGTGTGCCATTGCGGGCGCTGGGGTTGGCGATGTTCCTGCCGGTGTTCTGGCCG
TCGGTTGAATTGCCGCCGCCGGGGCAGGCCGAGGTTCGGGTGCTGGATGTCGGGCAGGGCCTTTCGGTGTTGATCCGCAC
CCGGAGCCAGGCCTGGCTTTATGACACGGGTGCGCGCAATGGCGATTTCGATATCGGTGAGCGCGTCGTCGTGCCGACGT
TGCGCAGCCTGGGGATCGATCATCTGGACCTGCTGATGCTCAGCCATGCGGACAACGACCACGCCGGTGGCGCCCAAGCG
GTAAAGAACTCGTTGCGGCCGCCGCAGGTGATCAGTGGCGAGCCGGAGCGCCTTTCGCCCAGGTTGCAGGCTCGGCCTTG
TCGGAAAGAGCACTGGGTGATCGATGGCGTGAATTTCTCAAGCTGGGCCTGGGACGGCGCGAAGGAGAGCAATGATCGCT
CCTGCGTGCTGGCGCTCGAGGCCGGCGGCGAGCGGTTGCTGTTGACCGGTGACTTGCCGCAGGCCGGCGAGCGGGCCTGG
CTGGCCGAGCACCCGGATGTCCACGTCGATTGGTTGCTGGCGGGACATCACGGCAGTCGCAGCTCCTCCGGGCCTGCCTT
CGTGCGGGCCCTGGGGCCATCCGTCGCGATCTTTTCCCGCGGCGCCAACAATCCCTATGGCCACCCCCATCCGTCGGTCG
TCGAGCGCTTTCGCGAGCTGGGCATCCGCCTTCACGATACGGCCGAGGAGGGCGCTCTGATACTGATGCTTGGCGCCCAC
GGCGAGCTCCGGGGAGTGCGGGAAGGCGCACATTTCTGGCAGGAAAAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(18-163)

Competence protein (Competence)

(196-459)

Metallo-beta-lactamase superfamily (Lactamase_B)

(496-663)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.053

97.554

0.576
  comA Ralstonia pseudosolanacearum GMI1000

34.505

100

0.36

Multiple sequence alignment