Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   GA645_RS19145 Genome accession   NZ_CP045118
Coordinates   4193386..4194021 (-) Length   211 a.a.
NCBI ID   WP_152224552.1    Uniprot ID   -
Organism   Pseudomonas sp. SCB32     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4188386..4199021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA645_RS19115 murB 4189458..4190477 (-) 1020 WP_152224547.1 UDP-N-acetylmuramate dehydrogenase -
  GA645_RS19120 - 4190474..4190938 (-) 465 WP_152224548.1 low molecular weight protein-tyrosine-phosphatase -
  GA645_RS19125 kdsB 4190938..4191702 (-) 765 WP_152224549.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GA645_RS19130 - 4191707..4191892 (-) 186 WP_081519465.1 Trm112 family protein -
  GA645_RS19135 lpxK 4191945..4192943 (-) 999 WP_152224550.1 tetraacyldisaccharide 4'-kinase -
  GA645_RS19140 - 4192943..4193389 (-) 447 WP_152224551.1 biopolymer transporter ExbD -
  GA645_RS19145 exbB 4193386..4194021 (-) 636 WP_152224552.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GA645_RS19150 comA 4194093..4196303 (-) 2211 WP_152228205.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GA645_RS19155 - 4196468..4196998 (+) 531 WP_152224553.1 DUF2062 domain-containing protein -
  GA645_RS19160 - 4197171..4198418 (-) 1248 WP_152224554.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22956.20 Da        Isoelectric Point: 8.0527

>NTDB_id=392038 GA645_RS19145 WP_152224552.1 4193386..4194021(-) (exbB) [Pseudomonas sp. SCB32]
MWELVKAGGWMMLPILLSSIAAMAIVAERLWTLRKSRVAPPQLLGQVWKQIKDKKMNSQALKDLRASSPLGEVLAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFSAFMGDGMANAPMLAGGISKALITTAS
GLIVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVTQGDREVDFAEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=392038 GA645_RS19145 WP_152224552.1 4193386..4194021(-) (exbB) [Pseudomonas sp. SCB32]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCTTGCTGAGCTCCATCGCCGCCATGGCGATCGTCGC
CGAACGTCTCTGGACCCTGCGCAAGAGCCGCGTGGCCCCGCCGCAACTGCTCGGCCAGGTGTGGAAGCAGATCAAGGACA
AGAAGATGAACAGCCAGGCCCTCAAGGACCTGCGCGCGTCGTCCCCGCTGGGTGAAGTCCTTGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCGTCCCGCGTCATCCACGAACTGGAGCGCTACCT
CAACGCGCTGGGCACCATCGCCGCCATGGCCCCGCTGCTCGGCCTGCTGGGCACCGTGTTCGGCATGATCCAGATCTTCA
GTGCCTTCATGGGTGATGGCATGGCCAACGCGCCGATGCTTGCCGGCGGTATCTCCAAGGCCCTGATCACCACGGCTTCC
GGCCTGATCGTGGCGATCCCGGCGGTGTTCTTCCACCGTTACCTGCTGCGCCGCGTCGATGAACTGGTCATCGCCATGGA
GCAGGAAGCCATCAAGCTGGTGGAAGTGACCCAGGGCGATCGCGAAGTCGATTTCGCCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.569

100

0.806

Multiple sequence alignment