Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   GA645_RS04810 Genome accession   NZ_CP045118
Coordinates   1008062..1009402 (-) Length   446 a.a.
NCBI ID   WP_152220449.1    Uniprot ID   -
Organism   Pseudomonas sp. SCB32     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1003062..1014402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA645_RS04780 - 1003784..1004215 (-) 432 WP_256676067.1 PilX N-terminal domain-containing pilus assembly protein -
  GA645_RS04785 - 1004251..1005147 (-) 897 WP_152220440.1 PilW family protein -
  GA645_RS04790 pilV 1005144..1005602 (-) 459 WP_152220442.1 type IV pilus modification protein PilV -
  GA645_RS04795 - 1005599..1006087 (-) 489 WP_152220444.1 GspH/FimT family pseudopilin -
  GA645_RS04800 - 1006238..1006750 (-) 513 WP_152220445.1 GspH/FimT family protein -
  GA645_RS04805 thiO 1006939..1008048 (+) 1110 WP_152220447.1 glycine oxidase ThiO -
  GA645_RS04810 pilR 1008062..1009402 (-) 1341 WP_152220449.1 sigma-54 dependent transcriptional regulator Regulator
  GA645_RS04815 pilS 1009418..1011007 (-) 1590 WP_152220451.1 PAS domain-containing sensor histidine kinase Regulator
  GA645_RS04820 - 1010997..1011233 (-) 237 WP_152220453.1 PP0621 family protein -
  GA645_RS04825 - 1011371..1012396 (-) 1026 WP_152220455.1 outer membrane protein assembly factor BamD -
  GA645_RS04830 rluD 1012546..1013505 (+) 960 WP_152220457.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  GA645_RS04835 pgeF 1013502..1014227 (+) 726 WP_152220459.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49723.89 Da        Isoelectric Point: 5.4508

>NTDB_id=392025 GA645_RS04810 WP_152220449.1 1008062..1009402(-) (pilR) [Pseudomonas sp. SCB32]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREFLAREPFDFCLTDMRLPDGTGLDLVQYIQQRHPQTPVAM
ITAFGSLDTAVQALKAGAFDFLTKPVDLGRLRELVSTALRLRFPDAEEAPVDNRLLGDSPPMRQMRNQIAKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSNIAFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQENSVDVRVLCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERRDDIPLLTDRV
LQRLAGDAGLPVAAVSPDAVEKLKSYRFPGNVRELENMLERAYTLCENDVIQAQDLRLAETASSGDGSAEASLAQIDNLE
DYLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=392025 GA645_RS04810 WP_152220449.1 1008062..1009402(-) (pilR) [Pseudomonas sp. SCB32]
ATGAGTCGTCAAAAAGCCCTGATCGTCGATGACGAACCCGATATTCGCGAGCTGCTGGAGATCACCCTTGGCCGCATGAA
GCTGGATACCCGAAGCGCCCGCAACGTCAAGGAAGCGCGCGAGTTCCTGGCCCGCGAGCCGTTCGACTTCTGCCTCACCG
ACATGCGCCTGCCCGACGGCACCGGCCTGGATCTGGTGCAGTACATCCAGCAGCGCCATCCGCAGACACCCGTGGCGATG
ATCACCGCCTTCGGCAGCCTGGACACCGCCGTGCAGGCACTCAAGGCCGGCGCCTTCGACTTCCTCACCAAGCCGGTCGA
CCTGGGACGCCTGCGCGAGCTGGTCAGCACGGCGCTGCGTCTGCGCTTCCCCGATGCCGAGGAGGCCCCGGTGGACAACC
GTCTACTGGGCGACTCGCCTCCCATGCGGCAGATGCGCAATCAGATTGCCAAACTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGCGGTGAATCCGGCAGCGGCAAGGAACTGGTGGCCCGGTTGATCCATGAGCAGGGCCCACGCTCGAACATCGCCTT
CGTTCCGGTGAACTGCGGTGCAATTCCGTCGGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCGGTGGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAACGGTGGCACCCTGTTCCTCGACGAGGTTGCCGACCTGCCG
TTGCCCATGCAGGTCAAGCTGCTGCGCGCAATCCAGGAAAAGGCCGTGCGCGCCGTCGGCGGCCAGCAGGAAAACTCGGT
GGACGTGCGCGTACTCTGCGCGACCCACAAGGACCTCGCGGCTGAAGTAGCCGCCGGTCGCTTCCGCCAGGACCTGTACT
ACCGCCTCAACGTCATCGAATTGCGCGTTCCGCCGCTGCGAGAGCGCCGCGACGACATACCACTGCTCACCGACCGCGTG
CTCCAGCGCCTGGCCGGCGATGCAGGACTGCCCGTGGCGGCCGTCAGCCCCGACGCTGTGGAGAAGCTCAAGAGCTACCG
TTTCCCCGGCAACGTGCGCGAGCTGGAGAACATGCTCGAGCGCGCCTACACCCTGTGCGAGAACGATGTGATCCAGGCGC
AGGACCTGCGCCTGGCCGAAACCGCCAGCAGCGGCGACGGAAGCGCAGAGGCCAGCCTCGCGCAGATCGACAACCTCGAG
GACTACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCCCTCGAAGAGACCCGCTGGAACCGCACTGCGGCGGCGCA
GCGACTCGGGCTTACGTTCCGATCAATGCGCTATCGACTGAAGAAGCTGGGGATCGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.117

100

0.881
  pilR Acinetobacter baumannii strain A118

49.673

100

0.511

Multiple sequence alignment