Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   F9230_RS16095 Genome accession   NZ_CP045099
Coordinates   3361489..3362913 (+) Length   474 a.a.
NCBI ID   WP_412674416.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ14     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3356489..3367913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9230_RS16075 (F9230_16120) thrC 3356755..3357894 (+) 1140 WP_078390103.1 threonine synthase -
  F9230_RS16080 (F9230_16125) - 3357980..3359035 (-) 1056 WP_153041792.1 serine hydrolase -
  F9230_RS16085 (F9230_16130) - 3359251..3359886 (+) 636 WP_004692836.1 response regulator -
  F9230_RS16090 (F9230_16135) pilS 3359908..3361476 (+) 1569 WP_234950828.1 sensor histidine kinase Regulator
  F9230_RS16095 (F9230_16140) pilR 3361489..3362913 (+) 1425 WP_412674416.1 sigma-54-dependent transcriptional regulator Regulator
  F9230_RS16100 (F9230_16145) - 3362918..3364093 (-) 1176 WP_234950830.1 S41 family peptidase -
  F9230_RS16105 (F9230_16150) gpmI 3364112..3365659 (-) 1548 WP_234950831.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  F9230_RS16110 (F9230_16155) lptG 3365783..3366853 (-) 1071 WP_234950832.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 53325.48 Da        Isoelectric Point: 6.5065

>NTDB_id=391883 F9230_RS16095 WP_412674416.1 3361489..3362913(+) (pilR) [Acinetobacter johnsonii strain AJ14]
MVEKKPLVLLVDDEQDLCTLMQMSLSRMGIDTHIAYRLQEAVQALKTHQYDACLTDLNLPDGNGLSLVDFIAQNYPNLPV
AVLTAYGNMDIAIAALKAGAFDFVSKPINQKHLEQLLQKAFNQPISQLHIQEDTLEHRLLIGQSLPIQQLRITLKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPTELMESELFGHRKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLTMQVKLLRAVQEKRIRPIGSDTEIDVDFRVISASHQDLEALVQQGKFRQDLYFRIHVMDIVLPALRERGNDIIL
LAQHFVQKICQEWDIPVKPLSERAREFLLAQYYPGNVRELRNMMERAITLSDESSIDLPHLQTAPLRPIAQTNYANATQQ
VPVGNDQLGHVPSRKLPEEGLELYLEKIEKEILMNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDGEDDSV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=391883 F9230_RS16095 WP_412674416.1 3361489..3362913(+) (pilR) [Acinetobacter johnsonii strain AJ14]
ATCGTGGAAAAAAAACCACTTGTTTTATTGGTGGATGACGAACAAGACTTATGTACACTGATGCAAATGTCTTTAAGTCG
GATGGGGATTGATACACATATTGCCTATCGCTTACAAGAGGCGGTTCAAGCCCTGAAAACGCATCAATATGATGCCTGTC
TAACCGATCTGAATTTACCCGATGGTAATGGCCTGAGCTTGGTCGATTTTATTGCTCAAAATTATCCTAATTTGCCCGTT
GCAGTGCTGACTGCTTACGGCAACATGGATATTGCAATTGCAGCACTTAAAGCTGGTGCTTTTGATTTTGTCAGTAAACC
AATCAACCAAAAACATTTAGAGCAACTTTTACAAAAAGCCTTTAATCAGCCCATCAGTCAGCTGCATATCCAAGAAGATA
CGCTTGAACATCGTCTGCTGATTGGTCAATCTCTTCCTATTCAACAGCTACGCATCACTTTAAAGAAAATTGCACGCTCG
CAAGCCCCTGTCTTTATTACAGGTGAGTCAGGCACTGGCAAAGAAGTGGTGGCTAATCTGGTACATCGCCTGAGCAATCG
TAATGAAGGGCCATTTATTGCCATTAACTGCGGTGCCATACCGACTGAACTGATGGAAAGTGAATTGTTTGGACATCGTA
AAGGCAGCTTCACAGGGGCGACTCAAGACAAACAAGGGCTGATTCTATCTGCGCATGGCGGCAGTTTATTTTTAGATGAA
ATTGCTGAGTTACCGCTCACTATGCAGGTGAAACTGCTGCGCGCGGTACAAGAAAAACGCATTCGCCCAATTGGGAGTGA
CACCGAAATTGATGTCGATTTCCGTGTGATTAGTGCCAGCCATCAAGACTTAGAAGCACTGGTGCAACAAGGCAAGTTCC
GTCAGGATTTGTACTTCCGCATCCATGTCATGGACATTGTGCTGCCTGCTCTACGTGAGCGTGGCAATGACATTATTCTT
TTGGCACAACATTTCGTTCAAAAAATCTGCCAAGAATGGGACATCCCAGTCAAACCACTGAGTGAACGTGCACGTGAGTT
TTTATTGGCCCAATATTATCCAGGCAATGTGCGTGAACTACGCAATATGATGGAACGTGCCATCACTTTAAGTGATGAAA
GCAGTATCGACTTACCCCACTTACAAACAGCCCCATTGCGACCAATTGCTCAGACTAACTATGCCAATGCCACCCAACAA
GTTCCTGTTGGCAATGATCAACTCGGTCATGTGCCTTCACGTAAATTGCCCGAAGAGGGTTTAGAGCTGTATTTAGAAAA
AATTGAAAAAGAAATTTTGATGAATGCGCTCAACCTCACCCACTGGAACCGCACTCTGGCGGCTAAAAAGCTCGGCATGT
CTTTCCGTTCTTTACGTTATCGCTTGAAAAAATTTGGGTTAGATGGCGAAGACGATTCCGTTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(425-465)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

74.473

100

0.745
  pilR Pseudomonas aeruginosa PAK

49.138

97.89

0.481

Multiple sequence alignment