Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   F9230_RS16090 Genome accession   NZ_CP045099
Coordinates   3359908..3361476 (+) Length   522 a.a.
NCBI ID   WP_234950828.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ14     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3354908..3366476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9230_RS16070 (F9230_16115) - 3355385..3356689 (+) 1305 WP_168159857.1 homoserine dehydrogenase -
  F9230_RS16075 (F9230_16120) thrC 3356755..3357894 (+) 1140 WP_078390103.1 threonine synthase -
  F9230_RS16080 (F9230_16125) - 3357980..3359035 (-) 1056 WP_153041792.1 serine hydrolase -
  F9230_RS16085 (F9230_16130) - 3359251..3359886 (+) 636 WP_004692836.1 response regulator -
  F9230_RS16090 (F9230_16135) pilS 3359908..3361476 (+) 1569 WP_234950828.1 sensor histidine kinase Regulator
  F9230_RS16095 (F9230_16140) pilR 3361489..3362913 (+) 1425 WP_412674416.1 sigma-54-dependent transcriptional regulator Regulator
  F9230_RS16100 (F9230_16145) - 3362918..3364093 (-) 1176 WP_234950830.1 S41 family peptidase -
  F9230_RS16105 (F9230_16150) gpmI 3364112..3365659 (-) 1548 WP_234950831.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59822.42 Da        Isoelectric Point: 6.6834

>NTDB_id=391882 F9230_RS16090 WP_234950828.1 3359908..3361476(+) (pilS) [Acinetobacter johnsonii strain AJ14]
MLKYSTNIQLNQYRLGVWYASYRLFIGCCLLLVYLLTYEQLFSNYQYPILYRSVLIGFIFISAFQLLSLKHVRKRIPLQL
TLLFIVDVISLSLLTFATDGPNLQLSLLFVITIFAACVLVDKQKALIITLIAVITLVYQHFIGTLFSISSLNTIGNSAVL
AFLFFVVYGSGQIAVRRFQVLENLNFYQSQELDQLQNINRYILEQTELGYLVLDENCHMVLSNPAACTLLGISPIYAYDK
YPLYKAQPDLFELLKFDQLKNGEKFQFTSQLSRFQIQIEIQKLQVPNQTLTLFVLQDAQKINQRVQQLKLAALGQLSASI
AHEIRNPLAAITQANELIQTNDPQQELLQNMIAKQALRIDKIIGDTLSMVRSKETYPTLIDVAAFLERFIVEDLPDVKDQ
IDYRISDQAQIQFDEQQLRQVLINLIRNAIRHNADEADHIQIRVYSYKNLVHIEVRDFGDGVAKQDQTALFQPFFSTSIN
GTGLGLYLSHSFCEANQAKLYYVEQKIGACFRIECPRINNDV

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=391882 F9230_RS16090 WP_234950828.1 3359908..3361476(+) (pilS) [Acinetobacter johnsonii strain AJ14]
ATGCTGAAATACTCAACCAATATTCAGTTAAATCAATACCGTCTAGGTGTTTGGTATGCATCGTATCGACTGTTTATTGG
TTGCTGTTTGTTGTTGGTTTATCTGCTGACTTATGAGCAGCTATTTTCAAATTATCAATATCCAATACTGTATCGTTCCG
TCCTGATTGGCTTTATTTTTATTAGTGCCTTTCAGCTATTGAGCCTCAAGCATGTGCGCAAGCGCATACCACTTCAGCTC
ACCTTGCTGTTTATCGTCGATGTCATTAGCCTCAGTTTACTCACTTTTGCCACCGATGGTCCGAACTTACAGTTAAGCTT
ATTGTTTGTGATCACGATCTTTGCCGCTTGTGTATTGGTCGATAAACAAAAAGCGCTCATCATTACCTTGATTGCTGTAA
TTACACTGGTTTATCAACACTTTATTGGAACGCTATTTTCAATTAGTTCATTGAATACCATTGGCAACAGTGCCGTGCTC
GCCTTTTTGTTCTTTGTGGTTTATGGGTCTGGACAAATTGCAGTCCGACGTTTTCAAGTCCTTGAAAATTTAAACTTCTA
TCAGTCCCAAGAGCTGGACCAACTGCAAAACATTAACCGTTATATTTTAGAGCAAACCGAGCTCGGCTATTTGGTGCTCG
ATGAAAACTGCCACATGGTGCTGAGTAATCCTGCCGCATGTACATTATTGGGCATCTCCCCGATTTATGCCTATGACAAA
TACCCCTTATATAAGGCGCAACCTGATTTATTTGAACTCCTCAAATTCGACCAACTGAAAAATGGGGAAAAATTCCAATT
TACATCGCAATTGAGTCGCTTTCAGATTCAGATCGAAATTCAAAAACTTCAAGTCCCGAATCAGACACTGACCTTATTTG
TGCTGCAAGATGCACAAAAAATTAATCAACGTGTACAACAACTCAAGCTGGCTGCACTGGGTCAACTTTCTGCCAGCATT
GCACATGAAATTCGCAACCCACTGGCAGCCATCACACAAGCTAATGAACTAATACAAACCAATGACCCACAACAAGAACT
GTTGCAGAACATGATTGCCAAACAAGCCTTACGGATTGATAAAATTATTGGCGATACACTGAGCATGGTACGCAGTAAAG
AAACCTATCCGACCTTAATTGATGTCGCCGCTTTTTTAGAACGTTTTATCGTTGAAGATTTGCCCGATGTCAAAGATCAA
ATTGATTACCGCATTTCCGATCAAGCTCAGATTCAGTTTGATGAACAACAACTGAGACAAGTGCTGATCAACCTGATTCG
AAATGCCATTCGGCATAATGCAGATGAAGCCGATCACATTCAAATTCGTGTCTATAGCTATAAAAACCTCGTCCACATTG
AAGTCCGTGATTTTGGTGATGGGGTCGCCAAACAGGATCAAACCGCCCTGTTTCAACCGTTTTTTAGTACCTCCATCAAT
GGAACTGGGTTAGGATTATATTTATCCCATAGTTTCTGCGAAGCCAACCAAGCTAAGCTATACTATGTAGAACAAAAAAT
AGGGGCATGCTTTCGGATTGAATGCCCCCGTATAAACAATGACGTGTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(414-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-372)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

60.433

97.318

0.588

Multiple sequence alignment