Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   F9230_RS15945 Genome accession   NZ_CP045099
Coordinates   3330085..3330408 (-) Length   107 a.a.
NCBI ID   WP_004692786.1    Uniprot ID   N9D026
Organism   Acinetobacter johnsonii strain AJ14     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3325085..3335408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9230_RS15925 (F9230_15970) - 3325123..3325866 (-) 744 WP_234950814.1 FHA domain-containing protein -
  F9230_RS15930 (F9230_15975) gspD 3325953..3328313 (-) 2361 WP_234950815.1 type II secretion system secretin GspD -
  F9230_RS15935 (F9230_15980) - 3328353..3329177 (-) 825 WP_168159846.1 type II secretion system protein N -
  F9230_RS15940 (F9230_15985) gspN 3329177..3329887 (-) 711 WP_148827120.1 type II secretion system protein N -
  F9230_RS15945 (F9230_15990) hns 3330085..3330408 (-) 324 WP_004692786.1 H-NS family nucleoid-associated regulatory protein Regulator
  F9230_RS15950 (F9230_15995) - 3330560..3330988 (-) 429 WP_004978627.1 acyl-CoA thioesterase -
  F9230_RS15955 (F9230_16000) - 3330996..3332189 (-) 1194 WP_234950816.1 heme biosynthesis protein HemY -
  F9230_RS15960 (F9230_16005) - 3332194..3333036 (-) 843 WP_234950817.1 hypothetical protein -
  F9230_RS15965 (F9230_16010) - 3333033..3333812 (-) 780 WP_234950818.1 uroporphyrinogen-III synthase -
  F9230_RS15970 (F9230_16015) hemC 3333825..3334745 (-) 921 WP_234950819.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12025.75 Da        Isoelectric Point: 9.5383

>NTDB_id=391880 F9230_RS15945 WP_004692786.1 3330085..3330408(-) (hns) [Acinetobacter johnsonii strain AJ14]
MPDISNLSVEELKRLQIEAEALIASKKDQAIEDAYTQINAIAENVGLSIEQILEFGATKRKKGTRKSVEPRYRNKGNAAE
TWTGRGKQPRWLVAQLEKGAKLEDFLI

Nucleotide


Download         Length: 324 bp        

>NTDB_id=391880 F9230_RS15945 WP_004692786.1 3330085..3330408(-) (hns) [Acinetobacter johnsonii strain AJ14]
ATGCCAGATATTAGTAATTTATCCGTAGAAGAGTTAAAGCGTCTACAAATCGAAGCGGAAGCTTTAATTGCATCTAAAAA
AGATCAAGCAATTGAAGATGCTTATACCCAAATTAACGCGATTGCGGAAAATGTAGGCTTAAGCATTGAGCAAATTTTAG
AGTTTGGCGCGACTAAGCGTAAAAAAGGCACACGTAAGTCGGTTGAACCGCGTTACCGTAACAAAGGCAATGCTGCTGAG
ACATGGACTGGCCGTGGTAAGCAACCACGTTGGTTGGTGGCTCAGTTAGAAAAAGGTGCGAAGCTTGAAGATTTTTTAAT
CTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9D026

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

86.792

99.065

0.86

Multiple sequence alignment