Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   F9230_RS14445 Genome accession   NZ_CP045099
Coordinates   3004265..3004663 (-) Length   132 a.a.
NCBI ID   WP_234950672.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ14     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2999265..3009663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9230_RS14415 (F9230_14435) - 2999338..2999607 (-) 270 WP_010325935.1 HPr family phosphocarrier protein -
  F9230_RS14420 (F9230_14440) rapZ 2999604..3000455 (-) 852 WP_087527524.1 RNase adapter RapZ -
  F9230_RS14425 (F9230_14445) panC 3000482..3001324 (-) 843 WP_234950670.1 pantoate--beta-alanine ligase -
  F9230_RS14430 (F9230_14450) panB 3001328..3002137 (-) 810 WP_234950671.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  F9230_RS14435 (F9230_14455) folK 3002174..3002662 (-) 489 WP_148826703.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  F9230_RS14440 (F9230_14460) pcnB 3002659..3004128 (-) 1470 WP_168157953.1 polynucleotide adenylyltransferase PcnB -
  F9230_RS14445 (F9230_14465) comEA 3004265..3004663 (-) 399 WP_234950672.1 ComEA family DNA-binding protein Machinery gene
  F9230_RS14450 (F9230_14470) mazG 3004682..3005443 (-) 762 WP_234950673.1 nucleoside triphosphate pyrophosphohydrolase -
  F9230_RS14455 (F9230_14475) - 3005562..3006329 (+) 768 WP_234950674.1 SDR family oxidoreductase -
  F9230_RS14460 (F9230_14480) - 3006368..3008674 (-) 2307 WP_004979149.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14608.05 Da        Isoelectric Point: 10.8498

>NTDB_id=391873 F9230_RS14445 WP_234950672.1 3004265..3004663(-) (comEA) [Acinetobacter johnsonii strain AJ14]
MIKIKVSLLIIALLLLSLLAWVPSGYAQSFDQNYLNWKAEQQAWDDRIQAPKSVKRAVSPVQAQPVSSANKISLNQANVD
QLQQLQGVGLKKAQAIVAYRQKQGPFKSIDELQQVRGIGPAIFAKNKTRLGL

Nucleotide


Download         Length: 399 bp        

>NTDB_id=391873 F9230_RS14445 WP_234950672.1 3004265..3004663(-) (comEA) [Acinetobacter johnsonii strain AJ14]
TTGATAAAAATAAAAGTAAGTTTGTTGATCATTGCGTTGTTATTACTGAGTTTACTGGCTTGGGTACCCAGTGGTTATGC
ACAGTCTTTTGATCAGAACTATCTGAACTGGAAAGCAGAGCAGCAGGCGTGGGATGATCGTATTCAAGCTCCTAAAAGCG
TGAAACGTGCTGTGTCTCCTGTTCAGGCTCAACCTGTGTCGAGTGCAAATAAAATTAGTTTAAATCAAGCCAATGTCGAT
CAGTTACAGCAGCTTCAGGGTGTGGGTCTAAAAAAGGCACAGGCAATCGTGGCCTATCGCCAGAAACAAGGGCCATTTAA
GAGCATAGATGAGCTACAACAGGTGCGCGGGATTGGACCGGCAATTTTTGCAAAAAATAAAACCCGTTTGGGCTTGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(68-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

54.918

92.424

0.508
  comEA Acinetobacter baumannii D1279779

52.419

93.939

0.492
  comEA Acinetobacter baylyi ADP1

45.794

81.061

0.371

Multiple sequence alignment