Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HFELIS_RS05425 Genome accession   NC_014810
Coordinates   1079898..1080704 (+) Length   268 a.a.
NCBI ID   WP_041303264.1    Uniprot ID   -
Organism   Helicobacter felis ATCC 49179     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1074898..1085704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HFELIS_RS05405 (HFELIS_10830) - 1075165..1077792 (-) 2628 WP_013469531.1 phosphoenolpyruvate carboxylase -
  HFELIS_RS05410 (HFELIS_10840) ilvC 1077865..1078878 (+) 1014 WP_013469532.1 ketol-acid reductoisomerase -
  HFELIS_RS05415 (HFELIS_10850) minD 1078878..1079669 (+) 792 WP_013469533.1 septum site-determining protein MinD -
  HFELIS_RS05420 (HFELIS_10860) minE 1079666..1079908 (+) 243 WP_013469534.1 cell division topological specificity factor MinE -
  HFELIS_RS05425 (HFELIS_10870) dprA 1079898..1080704 (+) 807 WP_041303264.1 DNA-processing protein DprA Machinery gene
  HFELIS_RS05430 (HFELIS_10880) dprB 1080713..1081099 (+) 387 WP_041303266.1 Holliday junction resolvase RuvX Machinery gene
  HFELIS_RS05435 (HFELIS_10890) - 1081096..1082061 (+) 966 WP_013469537.1 RluA family pseudouridine synthase -
  HFELIS_RS05440 (HFELIS_10900) - 1082006..1083262 (+) 1257 WP_013469538.1 fibronectin type III domain-containing protein -
  HFELIS_RS05445 (HFELIS_10910) trmB 1083266..1084414 (+) 1149 WP_013469539.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  HFELIS_RS05450 (HFELIS_10920) - 1084411..1085082 (+) 672 WP_013469540.1 cell division ATP-binding protein FtsE -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 29734.29 Da        Isoelectric Point: 8.4406

>NTDB_id=39178 HFELIS_RS05425 WP_041303264.1 1079898..1080704(+) (dprA) [Helicobacter felis ATCC 49179]
MRVSHFSYSKLKALPLALGRVKNPPKELYYTGNQELLQTPLKVAIVGTRQPSQYTQQHTAWLAKEIAKLGAVVVSGGALG
VDIIAQQHALPHTIMIAPCSLDYLYPPSNARVIEQIATEGLILSEYAQNTTPHRYSFLERNRLVIALSDVVIIPEANLHS
GSMSSAKYALHAQKPLFVLPHRLAESPGTQVLLAEGKAQSIYDIEAFCQTLCQTYKLNPPSTPPLEDHLSFFKTNPTCEQ
AYARYGTLIDEYELQGLITRRHGRMVLA

Nucleotide


Download         Length: 807 bp        

>NTDB_id=39178 HFELIS_RS05425 WP_041303264.1 1079898..1080704(+) (dprA) [Helicobacter felis ATCC 49179]
CTGAGAGTTAGCCATTTTTCTTACTCCAAGCTAAAAGCTCTTCCTCTTGCATTGGGGCGTGTCAAAAACCCTCCCAAAGA
ACTCTATTACACCGGCAATCAAGAATTGTTACAAACCCCTTTAAAAGTTGCCATCGTGGGCACACGCCAACCTAGCCAAT
ACACCCAACAACACACGGCATGGTTGGCTAAAGAGATCGCCAAATTAGGCGCGGTGGTGGTGAGCGGGGGCGCGTTGGGC
GTGGATATTATTGCCCAACAACACGCCCTGCCCCACACAATCATGATCGCCCCCTGTAGCCTAGATTATCTCTACCCCCC
CAGCAATGCGCGCGTTATTGAGCAAATCGCTACAGAGGGGCTTATTTTAAGCGAATACGCTCAAAATACCACTCCACATA
GATATTCTTTTTTAGAGCGCAATCGTTTGGTGATTGCTCTAAGCGATGTAGTGATCATCCCAGAGGCAAATCTACACAGC
GGATCGATGTCCAGTGCTAAATACGCCCTGCATGCCCAAAAACCCCTGTTTGTATTGCCCCATAGACTAGCAGAGAGCCC
GGGCACACAGGTACTTTTAGCAGAGGGCAAAGCGCAGAGCATTTACGATATAGAGGCGTTTTGCCAAACACTATGCCAAA
CTTATAAGCTCAACCCTCCTAGCACCCCACCCCTTGAGGATCACCTCAGCTTTTTTAAAACAAACCCCACTTGTGAGCAA
GCCTATGCCCGTTATGGGACTTTAATAGATGAATACGAATTGCAGGGCTTGATCACGCGCCGACATGGGCGCATGGTGTT
GGCGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

57.519

99.254

0.571
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

43.723

86.194

0.377

Multiple sequence alignment