Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HFELIS_RS05430 Genome accession   NC_014810
Coordinates   1080713..1081099 (+) Length   128 a.a.
NCBI ID   WP_041303266.1    Uniprot ID   -
Organism   Helicobacter felis ATCC 49179     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1075713..1086099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HFELIS_RS05410 (HFELIS_10840) ilvC 1077865..1078878 (+) 1014 WP_013469532.1 ketol-acid reductoisomerase -
  HFELIS_RS05415 (HFELIS_10850) minD 1078878..1079669 (+) 792 WP_013469533.1 septum site-determining protein MinD -
  HFELIS_RS05420 (HFELIS_10860) minE 1079666..1079908 (+) 243 WP_013469534.1 cell division topological specificity factor MinE -
  HFELIS_RS05425 (HFELIS_10870) dprA 1079898..1080704 (+) 807 WP_041303264.1 DNA-processing protein DprA Machinery gene
  HFELIS_RS05430 (HFELIS_10880) dprB 1080713..1081099 (+) 387 WP_041303266.1 Holliday junction resolvase RuvX Machinery gene
  HFELIS_RS05435 (HFELIS_10890) - 1081096..1082061 (+) 966 WP_013469537.1 RluA family pseudouridine synthase -
  HFELIS_RS05440 (HFELIS_10900) - 1082006..1083262 (+) 1257 WP_013469538.1 fibronectin type III domain-containing protein -
  HFELIS_RS05445 (HFELIS_10910) trmB 1083266..1084414 (+) 1149 WP_013469539.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  HFELIS_RS05450 (HFELIS_10920) - 1084411..1085082 (+) 672 WP_013469540.1 cell division ATP-binding protein FtsE -
  HFELIS_RS05455 (HFELIS_10930) - 1085069..1085878 (+) 810 WP_013469541.1 hypothetical protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14550.90 Da        Isoelectric Point: 8.2743

>NTDB_id=39179 HFELIS_RS05430 WP_041303266.1 1080713..1081099(+) (dprB) [Helicobacter felis ATCC 49179]
MLVGCDVGLKRIGLALYTQETILPMPAILRHNRDQARHDLKIFLENKRAVGLVVGLPNACYTDTRARVQHFIEGLDFAPI
FYVDEDDSSAQAQERIFHLPYKQRQKARKNGILDSLAACILLERYLGL

Nucleotide


Download         Length: 387 bp        

>NTDB_id=39179 HFELIS_RS05430 WP_041303266.1 1080713..1081099(+) (dprB) [Helicobacter felis ATCC 49179]
ATCTTGGTTGGCTGTGATGTGGGTTTAAAGCGCATCGGGTTAGCCCTCTACACCCAAGAAACCATTTTGCCCATGCCTGC
TATCTTGCGCCATAACCGCGATCAAGCCCGCCATGATCTTAAAATTTTTTTAGAGAATAAGCGCGCTGTAGGTTTGGTTG
TAGGTTTGCCCAACGCCTGCTACACCGACACGCGCGCGCGCGTGCAACATTTTATAGAGGGCTTGGACTTTGCACCTATT
TTTTATGTGGATGAAGATGATAGCAGTGCACAAGCTCAAGAGCGCATTTTTCATCTTCCTTACAAACAACGCCAAAAGGC
GCGCAAGAATGGAATCCTAGATAGCTTGGCAGCTTGTATTCTTTTGGAGCGTTATTTAGGATTATGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

51.587

98.438

0.508

Multiple sequence alignment