Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   GBN67_RS12835 Genome accession   NZ_CP045051
Coordinates   2645249..2645647 (-) Length   132 a.a.
NCBI ID   WP_234963044.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ312     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2640249..2650647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN67_RS12805 (GBN67_12800) - 2640322..2640591 (-) 270 WP_010325935.1 HPr family phosphocarrier protein -
  GBN67_RS12810 (GBN67_12805) rapZ 2640588..2641439 (-) 852 WP_004692298.1 RNase adapter RapZ -
  GBN67_RS12815 (GBN67_12810) panC 2641466..2642308 (-) 843 WP_234963042.1 pantoate--beta-alanine ligase -
  GBN67_RS12820 (GBN67_12815) panB 2642312..2643121 (-) 810 WP_234963043.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  GBN67_RS12825 (GBN67_12820) folK 2643158..2643646 (-) 489 WP_004692303.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  GBN67_RS12830 (GBN67_12825) pcnB 2643643..2645112 (-) 1470 WP_224467407.1 polynucleotide adenylyltransferase PcnB -
  GBN67_RS12835 (GBN67_12830) comEA 2645249..2645647 (-) 399 WP_234963044.1 ComEA family DNA-binding protein Machinery gene
  GBN67_RS12840 (GBN67_12835) mazG 2645666..2646427 (-) 762 WP_114836791.1 nucleoside triphosphate pyrophosphohydrolase -
  GBN67_RS12845 (GBN67_12840) - 2646546..2647313 (+) 768 WP_234963045.1 SDR family oxidoreductase -
  GBN67_RS12850 (GBN67_12845) - 2647354..2649660 (-) 2307 WP_004979149.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14650.13 Da        Isoelectric Point: 10.8498

>NTDB_id=391538 GBN67_RS12835 WP_234963044.1 2645249..2645647(-) (comEA) [Acinetobacter johnsonii strain AJ312]
MIKIKVSLLIIALLLLSLLAWVPSGYAQSFDQNYLNWKAEQQAWDDRIQAPKSVKRAVSPVQVQPVSNANKISLNQASVD
QLQQLQGVGLKKAQAIVAYRQKQGPFKTIDELQQVRGIGPAIFAKNKTRLGL

Nucleotide


Download         Length: 399 bp        

>NTDB_id=391538 GBN67_RS12835 WP_234963044.1 2645249..2645647(-) (comEA) [Acinetobacter johnsonii strain AJ312]
TTGATAAAAATAAAAGTAAGTTTGTTGATCATTGCGTTGTTATTGCTGAGTTTATTGGCTTGGGTGCCCAGTGGTTATGC
ACAGTCTTTTGATCAGAACTATCTGAACTGGAAAGCAGAGCAGCAGGCGTGGGATGATCGTATTCAAGCCCCCAAGAGCG
TGAAACGTGCTGTGTCGCCTGTTCAGGTCCAACCTGTGTCGAACGCAAATAAAATTAGTTTAAATCAAGCCAGTGTTGAT
CAATTGCAGCAACTTCAGGGTGTGGGTTTAAAAAAGGCCCAGGCAATCGTGGCCTATCGCCAGAAACAAGGGCCATTTAA
GACCATAGATGAGTTACAACAGGTGCGCGGGATTGGACCGGCAATTTTTGCAAAAAATAAAACCCGTTTGGGCTTGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(67-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

53.279

92.424

0.492
  comEA Acinetobacter baumannii D1279779

50.806

93.939

0.477
  comEA Acinetobacter baylyi ADP1

44.86

81.061

0.364

Multiple sequence alignment