Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Regulator
Locus tag   NMBNZ0533_RS05275 Genome accession   NC_017518
Coordinates   989193..989807 (+) Length   204 a.a.
NCBI ID   WP_014581127.1    Uniprot ID   -
Organism   Neisseria meningitidis NZ-05/33     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 984193..994807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBNZ0533_RS05255 (NMBNZ0533_0933) - 984201..984710 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NMBNZ0533_RS05260 (NMBNZ0533_0934) - 986029..986616 (-) 588 WP_002223431.1 superoxide dismutase -
  NMBNZ0533_RS05265 (NMBNZ0533_0935) dnaB 986780..988186 (+) 1407 WP_002220671.1 replicative DNA helicase -
  NMBNZ0533_RS05270 (NMBNZ0533_0936) pilH 988495..989163 (+) 669 WP_014582407.1 GspH/FimT family pseudopilin Machinery gene
  NMBNZ0533_RS05275 (NMBNZ0533_0937) pilV 989193..989807 (+) 615 WP_014581127.1 type IV pilus modification protein PilV Regulator
  NMBNZ0533_RS05280 (NMBNZ0533_0938) pilJ 989804..990772 (+) 969 WP_014582408.1 PilW family protein Machinery gene
  NMBNZ0533_RS05285 (NMBNZ0533_0939) pilK 990751..991344 (+) 594 WP_014581125.1 pilus assembly protein Machinery gene
  NMBNZ0533_RS05290 (NMBNZ0533_0940) pilX 991349..991822 (+) 474 WP_014581124.1 PilX family type IV pilin Machinery gene
  NMBNZ0533_RS05295 (NMBNZ0533_0941) dut 992385..992837 (+) 453 WP_002229326.1 dUTP diphosphatase -
  NMBNZ0533_RS05300 (NMBNZ0533_0942) dapC 992914..994101 (+) 1188 WP_014582409.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22076.97 Da        Isoelectric Point: 5.2544

>NTDB_id=39111 NMBNZ0533_RS05275 WP_014581127.1 989193..989807(+) (pilV) [Neisseria meningitidis NZ-05/33]
MKNNDCFRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYMGNHHTLSAVDGDFAVDAVKSKKDLAKAQLDRFGYELKNALQDAAAIYYAVCKDSSGAAPTLSAGSTFSSNCDNKA
NGDTLIKVLWVNDSAGDSDIARTNLETNGNNIVYTYQARVGGRE

Nucleotide


Download         Length: 615 bp        

>NTDB_id=39111 NMBNZ0533_RS05275 WP_014581127.1 989193..989807(+) (pilV) [Neisseria meningitidis NZ-05/33]
ATGAAGAATAATGATTGCTTCCGCCTGAAAAACCCCCAGTCCGGTATGGCGCTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCACTATTGTCTGTTCAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCAGAGACGCAAACCA
TCGTCAGTCAAATCACGCAAAACCTGATGGAGGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACATGGGAAACCATCATACACTATCAGCTGTGGATGGCGATTTTGCGGTTGATGCCGTGAAAAGCAAGAA
GGATTTGGCAAAAGCCCAGTTGGACAGGTTCGGTTATGAATTGAAAAATGCCTTGCAGGATGCGGCAGCCATCTATTACG
CCGTCTGCAAGGATTCGTCGGGTGCTGCGCCGACATTGTCCGCCGGCAGTACTTTTTCTTCAAATTGCGACAATAAGGCA
AACGGGGATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATCGCCCGTACGAATCTTGAGAC
GAACGGCAACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGGGAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

89.855

100

0.912
  pilV/pilI Neisseria gonorrhoeae MS11

85.784

100

0.858

Multiple sequence alignment