Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   NMBNZ0533_RS01735 Genome accession   NC_017518
Coordinates   316988..317437 (+) Length   149 a.a.
NCBI ID   WP_002214937.1    Uniprot ID   Q9JXJ2
Organism   Neisseria meningitidis NZ-05/33     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 311988..322437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBNZ0533_RS15105 comE 316436..316900 (+) 465 WP_162051247.1 ComEA family DNA-binding protein Machinery gene
  NMBNZ0533_RS01735 (NMBNZ0533_0307) comP 316988..317437 (+) 450 WP_002214937.1 type IV pilin protein Machinery gene
  NMBNZ0533_RS15990 (NMBNZ0533_0308) - 317598..317867 (-) 270 WP_002234367.1 5'-nucleotidase -
  NMBNZ0533_RS01745 (NMBNZ0533_0309) - 317979..318191 (-) 213 WP_002224145.1 hypothetical protein -
  NMBNZ0533_RS01750 (NMBNZ0533_0310) - 318423..318890 (+) 468 Protein_307 transposase -
  NMBNZ0533_RS12040 - 319322..319537 (+) 216 WP_025458585.1 helix-turn-helix transcriptional regulator -
  NMBNZ0533_RS01765 (NMBNZ0533_0311) - 319539..320138 (+) 600 WP_002219927.1 ScaI family restriction endonuclease -
  NMBNZ0533_RS01770 (NMBNZ0533_0312) - 320195..321025 (-) 831 WP_033908430.1 site-specific DNA-methyltransferase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16834.81 Da        Isoelectric Point: 9.7951

>NTDB_id=39090 NMBNZ0533_RS01735 WP_002214937.1 316988..317437(+) (comP) [Neisseria meningitidis NZ-05/33]
MTDNRGFTLVELISVVLILSVLALIVYPSYRNYVEKAKINAVRAALLENAHFMEKFYLQNGRFKQTSTKWPSLPIKEAEG
FCIRLNGIARGALDSKFMLKAVAIDKDKNPFIIKMNENLVTFICKKSASSCSDGLDYFKGNDKDCKLLK

Nucleotide


Download         Length: 450 bp        

>NTDB_id=39090 NMBNZ0533_RS01735 WP_002214937.1 316988..317437(+) (comP) [Neisseria meningitidis NZ-05/33]
ATGACTGATAATCGGGGGTTTACGCTGGTTGAATTAATATCAGTGGTCTTGATATTGTCTGTACTTGCTTTAATTGTTTA
TCCGAGCTATCGCAATTATGTTGAGAAAGCAAAGATAAATGCAGTGCGGGCAGCCTTGTTAGAAAATGCACATTTTATGG
AAAAGTTTTATCTGCAGAATGGGAGATTTAAACAAACATCTACCAAATGGCCAAGTTTGCCGATTAAAGAGGCAGAAGGC
TTTTGTATCCGTTTGAATGGAATCGCGCGCGGGGCCTTAGACAGTAAATTCATGTTGAAGGCGGTAGCCATAGATAAAGA
TAAAAATCCTTTTATTATTAAGATGAATGAAAATCTAGTAACCTTTATTTGCAAGAAGTCCGCCAGTTCGTGTAGTGACG
GGCTGGATTATTTTAAAGGAAATGATAAGGACTGCAAGTTACTTAAGTAG

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JXJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria gonorrhoeae MS11

100

100

1
  comP Neisseria meningitidis 8013

99.329

100

0.993
  comP Neisseria subflava NJ9703

49.66

98.658

0.49

Multiple sequence alignment