Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LF145_RS00040 Genome accession   NZ_CP044534
Coordinates   9554..10129 (+) Length   191 a.a.
NCBI ID   WP_057749890.1    Uniprot ID   A0A0R1P5G0
Organism   Limosilactobacillus frumenti strain LF145     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 43..10129 9554..10129 within 0


Gene organization within MGE regions


Location: 43..10129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF145_RS00005 (LF145_00005) dnaA 43..1362 (+) 1320 WP_057749868.1 chromosomal replication initiator protein DnaA -
  LF145_RS00010 (LF145_00010) dnaN 1551..2690 (+) 1140 WP_057749870.1 DNA polymerase III subunit beta -
  LF145_RS00015 (LF145_00015) yaaA 2927..3151 (+) 225 WP_057749874.1 S4 domain-containing protein YaaA -
  LF145_RS00020 (LF145_00020) recF 3154..4275 (+) 1122 WP_057749877.1 DNA replication/repair protein RecF -
  LF145_RS00025 (LF145_00025) gyrB 4275..6221 (+) 1947 WP_057749879.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  LF145_RS00030 (LF145_00030) gyrA 6506..9028 (+) 2523 WP_057749883.1 DNA gyrase subunit A -
  LF145_RS00035 (LF145_00035) rpsF 9224..9514 (+) 291 WP_057749886.1 30S ribosomal protein S6 -
  LF145_RS00040 (LF145_00040) ssb 9554..10129 (+) 576 WP_057749890.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20802.26 Da        Isoelectric Point: 4.5657

>NTDB_id=390863 LF145_RS00040 WP_057749890.1 9554..10129(+) (ssb) [Limosilactobacillus frumenti strain LF145]
MLNRAVLTGRLTRDPELRYTTSGTAVVSFTLAVDRQFRNQNGDRDADFINCVIWRKSAENFSNFTHKGSLVGIEGRIQTR
NYENQQGNRVYVTEVVVDNFALLEPRQGGNNQGGQQYGGNQQSFGGQGQQPQFNNQPQSGNNAPQANSSANQGGFGGNNN
NQGQANNNPFPPDSGDDGGQSIDLSDDELPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=390863 LF145_RS00040 WP_057749890.1 9554..10129(+) (ssb) [Limosilactobacillus frumenti strain LF145]
ATGCTTAATCGTGCAGTCTTAACTGGACGCTTAACTAGAGATCCTGAGTTGCGGTACACAACCAGCGGTACGGCTGTTGT
TTCATTCACTTTAGCCGTTGATCGTCAATTCCGGAACCAAAATGGTGACCGGGACGCTGATTTTATCAATTGCGTCATTT
GGCGGAAATCTGCTGAAAACTTCAGTAACTTTACGCATAAGGGTTCTCTTGTTGGAATTGAAGGCCGGATCCAAACCCGG
AATTACGAAAACCAACAAGGTAATCGGGTATACGTTACTGAAGTTGTTGTTGATAACTTTGCGTTGCTTGAACCTCGTCA
AGGTGGTAATAACCAAGGCGGCCAACAATATGGTGGCAACCAACAATCATTTGGTGGTCAGGGTCAGCAACCACAGTTCA
ACAATCAGCCACAATCAGGAAATAATGCTCCTCAGGCTAATTCGTCTGCTAATCAAGGCGGCTTTGGTGGTAACAATAAC
AACCAAGGGCAAGCCAATAATAATCCATTCCCACCTGATAGTGGGGATGACGGAGGTCAATCTATTGACCTTTCCGATGA
CGAATTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R1P5G0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.068

100

0.571
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.262

100

0.503

Multiple sequence alignment