Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LH506_RS00040 | Genome accession | NZ_CP044499 |
| Coordinates | 9423..9920 (+) | Length | 165 a.a. |
| NCBI ID | WP_057756305.1 | Uniprot ID | A0A0R2BRI8 |
| Organism | Lapidilactobacillus dextrinicus strain LH506 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4423..14920
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LH506_RS00030 (LH506_00030) | gyrA | 6294..8885 (+) | 2592 | WP_057756299.1 | DNA gyrase subunit A | - |
| LH506_RS00035 (LH506_00035) | rpsF | 9092..9394 (+) | 303 | WP_057756302.1 | 30S ribosomal protein S6 | - |
| LH506_RS00040 (LH506_00040) | ssb | 9423..9920 (+) | 498 | WP_057756305.1 | single-stranded DNA-binding protein | Machinery gene |
| LH506_RS00045 (LH506_00045) | rpsR | 9959..10195 (+) | 237 | WP_057756309.1 | 30S ribosomal protein S18 | - |
| LH506_RS00050 (LH506_00050) | - | 10523..12541 (+) | 2019 | WP_057756311.1 | DHH family phosphoesterase | - |
| LH506_RS00055 (LH506_00055) | rplI | 12571..13023 (+) | 453 | WP_057756314.1 | 50S ribosomal protein L9 | - |
| LH506_RS00060 (LH506_00060) | dnaB | 13102..14496 (+) | 1395 | WP_057756318.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 165 a.a. Molecular weight: 18260.86 Da Isoelectric Point: 4.6830
>NTDB_id=390603 LH506_RS00040 WP_057756305.1 9423..9920(+) (ssb) [Lapidilactobacillus dextrinicus strain LH506]
MINRVVLVGRLTKDVDLRYTGSGAAVASFTIAVNRQFTNAQGDREADFIQCVIWRKAAENFKNFTHKGSLVGIDGRIQTR
NYDNQQGQRVYVTEVVVDNFSLLEPKSNNAGSGQSMNSNNSNNYSQSNNMNNSFGNQNNQQNSVGEDPFANNGEPIDISD
DDLPF
MINRVVLVGRLTKDVDLRYTGSGAAVASFTIAVNRQFTNAQGDREADFIQCVIWRKAAENFKNFTHKGSLVGIDGRIQTR
NYDNQQGQRVYVTEVVVDNFSLLEPKSNNAGSGQSMNSNNSNNYSQSNNMNNSFGNQNNQQNSVGEDPFANNGEPIDISD
DDLPF
Nucleotide
Download Length: 498 bp
>NTDB_id=390603 LH506_RS00040 WP_057756305.1 9423..9920(+) (ssb) [Lapidilactobacillus dextrinicus strain LH506]
ATGATTAATCGTGTAGTACTTGTTGGCCGACTTACAAAGGACGTTGATTTGCGTTACACCGGTAGTGGCGCTGCTGTTGC
ATCCTTCACTATTGCAGTTAATCGTCAATTTACAAATGCCCAAGGTGATCGCGAAGCTGATTTTATTCAATGTGTGATTT
GGCGTAAAGCAGCTGAAAACTTCAAGAACTTTACTCATAAAGGTTCTTTAGTTGGTATTGATGGTCGTATTCAAACACGT
AACTATGATAACCAACAAGGACAACGTGTGTATGTGACTGAAGTTGTCGTTGATAACTTTTCATTATTGGAACCAAAGAG
TAACAATGCTGGCTCAGGTCAGTCGATGAACTCTAATAATTCTAATAATTATAGTCAATCAAATAATATGAATAATAGTT
TTGGTAATCAGAATAACCAACAAAATTCTGTTGGTGAAGATCCTTTTGCTAATAATGGCGAACCTATTGATATTTCTGAT
GATGATTTACCATTCTAA
ATGATTAATCGTGTAGTACTTGTTGGCCGACTTACAAAGGACGTTGATTTGCGTTACACCGGTAGTGGCGCTGCTGTTGC
ATCCTTCACTATTGCAGTTAATCGTCAATTTACAAATGCCCAAGGTGATCGCGAAGCTGATTTTATTCAATGTGTGATTT
GGCGTAAAGCAGCTGAAAACTTCAAGAACTTTACTCATAAAGGTTCTTTAGTTGGTATTGATGGTCGTATTCAAACACGT
AACTATGATAACCAACAAGGACAACGTGTGTATGTGACTGAAGTTGTCGTTGATAACTTTTCATTATTGGAACCAAAGAG
TAACAATGCTGGCTCAGGTCAGTCGATGAACTCTAATAATTCTAATAATTATAGTCAATCAAATAATATGAATAATAGTT
TTGGTAATCAGAATAACCAACAAAATTCTGTTGGTGAAGATCCTTTTGCTAATAATGGCGAACCTATTGATATTTCTGAT
GATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
68.824 |
100 |
0.709 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.047 |
100 |
0.636 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
64.242 |
0.388 |