Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   F8M43_RS18520 Genome accession   NZ_CP044498
Coordinates   3541203..3541892 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain ms-2     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3536203..3546892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8M43_RS18485 flgN 3536383..3536865 (-) 483 WP_003227999.1 flagellar protein FlgN -
  F8M43_RS18490 flgM 3536881..3537147 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  F8M43_RS18495 yvyF 3537228..3537647 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  F8M43_RS18500 comFC 3537721..3538443 (-) 723 WP_038427947.1 comF operon protein ComFC Machinery gene
  F8M43_RS18505 comFB 3538407..3538703 (-) 297 WP_015483764.1 late competence protein ComFB -
  F8M43_RS18510 comFA 3538763..3540154 (-) 1392 WP_038427948.1 ATP-dependent helicase ComFA Machinery gene
  F8M43_RS18515 fakBA 3540260..3541105 (-) 846 WP_003244125.1 DegV family protein -
  F8M43_RS18520 degU 3541203..3541892 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  F8M43_RS18525 degS 3541975..3543132 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  F8M43_RS18530 yvyE 3543349..3544002 (+) 654 WP_003227979.1 YigZ family protein -
  F8M43_RS18535 tagV 3544002..3545177 (+) 1176 WP_015251114.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  F8M43_RS18540 tagO 3545250..3546326 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=390591 F8M43_RS18520 WP_003219701.1 3541203..3541892(-) (degU) [Bacillus subtilis strain ms-2]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=390591 F8M43_RS18520 WP_003219701.1 3541203..3541892(-) (degU) [Bacillus subtilis strain ms-2]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment