Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   F8B64_RS09385 Genome accession   NZ_CP044497
Coordinates   1871016..1871363 (-) Length   115 a.a.
NCBI ID   WP_005693346.1    Uniprot ID   -
Organism   Haemophilus influenzae strain PittGG     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1866016..1876363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8B64_RS09360 (F8B64_09360) otnI 1866484..1867260 (-) 777 WP_012055347.1 2-oxo-tetronate isomerase -
  F8B64_RS09365 (F8B64_09365) otnC 1867263..1867895 (-) 633 WP_005665968.1 3-oxo-tetronate 4-phosphate decarboxylase -
  F8B64_RS09370 (F8B64_09370) otnK 1867892..1869133 (-) 1242 WP_074039295.1 3-oxo-tetronate kinase -
  F8B64_RS09375 (F8B64_09375) ltnD 1869136..1870041 (-) 906 WP_005665973.1 L-threonate dehydrogenase -
  F8B64_RS09380 (F8B64_09380) - 1870212..1870969 (+) 758 Protein_1791 DeoR family transcriptional regulator -
  F8B64_RS09385 (F8B64_09385) comE1/comEA 1871016..1871363 (-) 348 WP_005693346.1 helix-hairpin-helix domain-containing protein Machinery gene
  F8B64_RS09390 (F8B64_09390) ispH 1871532..1872476 (-) 945 WP_012055344.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  F8B64_RS09395 (F8B64_09395) lspA 1872473..1872988 (-) 516 WP_005655980.1 signal peptidase II -
  F8B64_RS09400 (F8B64_09400) - 1873058..1874617 (-) 1560 WP_041174828.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12355.16 Da        Isoelectric Point: 8.0085

>NTDB_id=390522 F8B64_RS09385 WP_005693346.1 1871016..1871363(-) (comE1/comEA) [Haemophilus influenzae strain PittGG]
MKLMKTLFTSVVLCGALVVSSSFAEEKATEQTAQSVVTTQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=390522 F8B64_RS09385 WP_005693346.1 1871016..1871363(-) (comE1/comEA) [Haemophilus influenzae strain PittGG]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGCGCTGGTTGTTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAATCTGTTGTAACAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

98.214

97.391

0.957
  comEA/comE1 Glaesserella parasuis strain SC1401

58.261

100

0.583
  comEA Vibrio campbellii strain DS40M4

39.286

97.391

0.383

Multiple sequence alignment