Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LA749_RS00040 | Genome accession | NZ_CP044496 |
| Coordinates | 9313..9855 (+) | Length | 180 a.a. |
| NCBI ID | WP_056969905.1 | Uniprot ID | A0A0D6A0Q8 |
| Organism | Lactobacillus acetotolerans strain LA749 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4313..14855
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LA749_RS00030 (LA749_00030) | gyrA | 6251..8764 (+) | 2514 | WP_056969903.1 | DNA gyrase subunit A | - |
| LA749_RS00035 (LA749_00035) | rpsF | 8972..9268 (+) | 297 | WP_054681406.1 | 30S ribosomal protein S6 | - |
| LA749_RS00040 (LA749_00040) | ssb | 9313..9855 (+) | 543 | WP_056969905.1 | single-stranded DNA-binding protein | Machinery gene |
| LA749_RS00045 (LA749_00045) | rpsR | 9880..10119 (+) | 240 | WP_054681409.1 | 30S ribosomal protein S18 | - |
| LA749_RS00050 (LA749_00050) | - | 10288..12321 (+) | 2034 | WP_056969907.1 | DHH family phosphoesterase | - |
| LA749_RS00055 (LA749_00055) | rplI | 12333..12788 (+) | 456 | WP_056969909.1 | 50S ribosomal protein L9 | - |
| LA749_RS00060 (LA749_00060) | dnaB | 12827..14209 (+) | 1383 | WP_056969911.1 | replicative DNA helicase | - |
| LA749_RS00065 (LA749_00065) | - | 14435..14635 (+) | 201 | WP_054681411.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 180 a.a. Molecular weight: 19476.13 Da Isoelectric Point: 4.9713
>NTDB_id=390474 LA749_RS00040 WP_056969905.1 9313..9855(+) (ssb) [Lactobacillus acetotolerans strain LA749]
MINRAVLVGRLTRDPELRTTTSGISVASFTLAVDRQYTNAQGERGADFISCVIWRKAAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFALLESRKTREAQSQNGGFTPNNNGNVGTGNAPSTPSSNNSQSNGNTSNNNDNNDSKKDKP
KDPFAGSGDTIDISDDDLPF
MINRAVLVGRLTRDPELRTTTSGISVASFTLAVDRQYTNAQGERGADFISCVIWRKAAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFALLESRKTREAQSQNGGFTPNNNGNVGTGNAPSTPSSNNSQSNGNTSNNNDNNDSKKDKP
KDPFAGSGDTIDISDDDLPF
Nucleotide
Download Length: 543 bp
>NTDB_id=390474 LA749_RS00040 WP_056969905.1 9313..9855(+) (ssb) [Lactobacillus acetotolerans strain LA749]
ATGATTAATAGAGCTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTACGAGTGGAATCTCAGTTGC
TAGCTTTACGCTTGCCGTTGACCGTCAGTATACTAACGCTCAAGGTGAAAGAGGCGCAGACTTTATCAGCTGTGTGATCT
GGAGAAAGGCTGCGGAGAACTTCTGTAACTTTACTTCAAAGGGATCATTAGTTGGTATTGATGGCCGAATTCAAACTAGA
AGTTATGATAACAAAGATGGGCAGCGAGTTTATGTAACTGAAGTTGTAGTAGACAATTTCGCGTTACTTGAATCACGTAA
AACTCGTGAGGCTCAAAGCCAGAATGGCGGTTTCACTCCAAATAACAATGGGAATGTTGGTACTGGGAATGCACCTAGCA
CGCCAAGTAGCAATAATTCTCAAAGTAATGGAAATACATCAAATAATAATGACAACAATGATAGTAAAAAAGATAAACCT
AAAGATCCATTTGCTGGATCGGGCGATACCATTGACATTTCAGATGATGATCTTCCATTCTAA
ATGATTAATAGAGCTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTACGAGTGGAATCTCAGTTGC
TAGCTTTACGCTTGCCGTTGACCGTCAGTATACTAACGCTCAAGGTGAAAGAGGCGCAGACTTTATCAGCTGTGTGATCT
GGAGAAAGGCTGCGGAGAACTTCTGTAACTTTACTTCAAAGGGATCATTAGTTGGTATTGATGGCCGAATTCAAACTAGA
AGTTATGATAACAAAGATGGGCAGCGAGTTTATGTAACTGAAGTTGTAGTAGACAATTTCGCGTTACTTGAATCACGTAA
AACTCGTGAGGCTCAAAGCCAGAATGGCGGTTTCACTCCAAATAACAATGGGAATGTTGGTACTGGGAATGCACCTAGCA
CGCCAAGTAGCAATAATTCTCAAAGTAATGGAAATACATCAAATAATAATGACAACAATGATAGTAAAAAAGATAAACCT
AAAGATCCATTTGCTGGATCGGGCGATACCATTGACATTTCAGATGATGATCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.773 |
100 |
0.611 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.543 |
100 |
0.517 |