Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   HKM25_RS11295 Genome accession   NZ_CP053210
Coordinates   2203759..2204856 (+) Length   365 a.a.
NCBI ID   WP_000266660.1    Uniprot ID   Q97N44
Organism   Streptococcus pneumoniae strain 6A-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2198759..2209856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKM25_RS11270 (HKM25_2317) pgsA 2199280..2199825 (-) 546 WP_000712132.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HKM25_RS11275 (HKM25_2318) rodZ 2199836..2200657 (-) 822 WP_001227958.1 cytoskeleton protein RodZ -
  HKM25_RS11280 (HKM25_2319) - 2200699..2201982 (-) 1284 WP_000170228.1 pitrilysin family protein -
  HKM25_RS11285 (HKM25_2320) - 2201979..2203229 (-) 1251 WP_000424261.1 pitrilysin family protein -
  HKM25_RS11290 (HKM25_2321) - 2203388..2203756 (+) 369 WP_000455898.1 RNA-binding S4 domain-containing protein -
  HKM25_RS11295 (HKM25_2322) recF 2203759..2204856 (+) 1098 WP_000266660.1 DNA replication/repair protein RecF Machinery gene
  HKM25_RS11300 (HKM25_2323) guaB 2204907..2206385 (-) 1479 WP_000073428.1 IMP dehydrogenase -
  HKM25_RS11305 (HKM25_2324) trpS 2206537..2207562 (-) 1026 WP_000165444.1 tryptophan--tRNA ligase -
  HKM25_RS11310 (HKM25_2325) - 2207768..2209390 (+) 1623 WP_000958770.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41900.00 Da        Isoelectric Point: 9.0596

>NTDB_id=390474 HKM25_RS11295 WP_000266660.1 2203759..2204856(+) (recF) [Streptococcus pneumoniae strain 6A-10]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKAAVNGN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=390474 HKM25_RS11295 WP_000266660.1 2203759..2204856(+) (recF) [Streptococcus pneumoniae strain 6A-10]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCTATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTGCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97N44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

99.726

100

0.997
  recF Bacillus subtilis subsp. subtilis str. 168

45.902

100

0.46

Multiple sequence alignment